PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Populus trichocarpa	Chr05	1	CH_ptr_327	5	21	0.000401843
Populus trichocarpa	Chr08	3	CH_ptr_499	4	5	0.000411123
Solanum lycopersicum	ch11	1	CH_sly_136	8	29	0.0000000185247
Solanum lycopersicum	ch06	2	CH_sly_491	5	13	0.000878065
Solanum lycopersicum	ch11	2	CH_sly_143	9	32	0.0000000454951
Solanum lycopersicum	ch06	5	CH_sly_128	10	121	0.000823482
Solanum lycopersicum	ch11	6	CH_sly_57	12	36	0.00000000000218244
Solanum tuberosum	chr01	1	CH_stu_239	8	42	0.000000436486
Solanum tuberosum	chr01	3	CH_stu_400	9	43	0.00000109187

GO term	Description	Number of clusters
GO:0006333	chromatin assembly or disassembly	2
GO:0010452	histone H3-K36 methylation	2
GO:0016569	covalent chromatin modification	2
GO:0016572	histone phosphorylation	3
GO:0016575	histone deacetylation	1
GO:0031497	chromatin assembly	23
GO:0031507	heterochromatin assembly	1
GO:0034968	histone lysine methylation	1
GO:0035067	negative regulation of histone acetylation	8
GO:0043967	histone H4 acetylation	6
GO:0043968	histone H2A acetylation	4
GO:0070734	histone H3-K27 methylation	4
GO:0070932	histone H3 deacetylation	1
GO:0090309	positive regulation of methylation-dependent chromatin silencing	8

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V