PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006310
Description: DNA recombination

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_43	1	CH_cpa_88	3	3	0.0000463169
Carica papaya	supercontig_43	2	CH_cpa_214	3	3	0.000589056
Carica papaya	supercontig_43	3	CH_cpa_336	3	3	0.000843205
Cucumis melo	CM3.5_scaffold00010	3	CH_cme_89	6	11	0.0000000109649
Eucalyptus grandis	scaffold_2	3	CH_egr_793	5	26	0.000270294
Eucalyptus grandis	scaffold_2	3	CH_egr_349	6	9	0.000000000911853
Malus domestica	17	2	CH_mdo_230	3	4	0.00029921
Malus domestica	17	3	CH_mdo_308	3	4	0.000335076
Oryza sativa ssp. japonica	10	1	CH_osa_105	10	79	0.00000000319655
Oryza sativa ssp. japonica	10	1	CH_osa_173	8	63	0.00000108816
Oryza sativa ssp. japonica	3	1	CH_osa_98	9	46	0.000000000930856
Oryza sativa ssp. japonica	10	2	CH_osa_198	8	63	0.00000716772
Oryza sativa ssp. japonica	10	2	CH_osa_124	10	79	0.0000000341352
Oryza sativa ssp. japonica	3	2	CH_osa_115	9	46	0.000000007944
Oryza sativa ssp. japonica	10	3	CH_osa_145	10	79	0.0000000492138
Oryza sativa ssp. japonica	3	3	CH_osa_129	9	46	0.0000000110695
Oryza sativa ssp. japonica	10	4	CH_osa_24	20	250	6.39798e-18
Oryza sativa ssp. japonica	10	4	CH_osa_80	11	185	0.000000769386
Oryza sativa ssp. japonica	3	4	CH_osa_53	11	92	0.000000000327826
Oryza sativa ssp. japonica	10	5	CH_osa_107	11	185	0.00000975333
Oryza sativa ssp. japonica	10	5	CH_osa_29	20	250	7.76726e-16
Oryza sativa ssp. japonica	3	5	CH_osa_65	11	92	0.00000000445015
Oryza sativa ssp. japonica	10	6	CH_osa_34	21	258	1.24809e-16
Oryza sativa ssp. japonica	3	6	CH_osa_76	11	92	0.00000000665651
Oryza sativa ssp. japonica	10	7	CH_osa_9	11	82	0.0000000000874566
Oryza sativa ssp. japonica	10	7	CH_osa_30	7	63	0.0000500068
Oryza sativa ssp. japonica	3	7	CH_osa_11	9	46	0.000000000939334
Oryza sativa ssp. japonica	10	8	CH_osa_8	11	82	0.00000000120235
Oryza sativa ssp. japonica	10	8	CH_osa_37	7	63	0.000258541
Oryza sativa ssp. japonica	3	8	CH_osa_10	9	46	0.00000000804754
Oryza sativa ssp. japonica	10	9	CH_osa_42	7	63	0.000304442
Oryza sativa ssp. japonica	10	9	CH_osa_9	11	82	0.00000000156006
Oryza sativa ssp. japonica	3	9	CH_osa_11	9	46	0.00000000996633
Oryza sativa ssp. japonica	10	10	CH_osa_32	10	185	0.0000112685
Oryza sativa ssp. japonica	10	10	CH_osa_5	22	302	3.43132e-19
Oryza sativa ssp. japonica	3	10	CH_osa_10	11	92	0.000000000338152
Oryza sativa ssp. japonica	10	11	CH_osa_5	21	258	5.72722e-17
Oryza sativa ssp. japonica	10	11	CH_osa_63	10	185	0.000112426
Oryza sativa ssp. japonica	3	11	CH_osa_16	11	92	0.00000000461246
Oryza sativa ssp. japonica	10	12	CH_osa_63	10	185	0.000141164
Oryza sativa ssp. japonica	10	12	CH_osa_5	21	258	9.45005e-17
Oryza sativa ssp. japonica	3	12	CH_osa_16	11	92	0.00000000597949
Populus trichocarpa	Chr05	1	CH_ptr_218	4	5	0.0000078587
Solanum lycopersicum	ch01	1	CH_sly_215	4	8	0.00000291837
Solanum lycopersicum	ch01	2	CH_sly_343	4	8	0.000142031
Solanum lycopersicum	ch01	3	CH_sly_137	6	8	0.000000000704486
Solanum tuberosum	chr01	3	CH_stu_466	4	5	0.00000917603
Solanum tuberosum	chr08	3	CH_stu_266	5	5	0.00000000481676

Available child term results

GO term	Description	Number of clusters
GO:0000712	resolution of meiotic recombination intermediates	5
GO:0000724	double-strand break repair via homologous recombination	9
GO:0006312	mitotic recombination	2
GO:0016444	somatic cell DNA recombination	6
GO:0045128	negative regulation of reciprocal meiotic recombination	4
GO:0045910	negative regulation of DNA recombination	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V