PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Medicago truncatula	chr2	3	CH_mtr_820	3	7	0.000608641
Oryza sativa ssp. japonica	12	3	CH_osa_339	3	6	0.0000992136
Populus trichocarpa	Chr14	1	CH_ptr_292	4	25	0.000189419
Populus trichocarpa	Chr14	2	CH_ptr_359	4	25	0.000189419
Populus trichocarpa	Chr03	3	CH_ptr_205	4	4	0.0000000244757
Populus trichocarpa	Chr14	3	CH_ptr_488	4	25	0.000305211
Solanum lycopersicum	ch04	3	CH_sly_224	4	6	0.000000267091
Theobroma cacao	scaffold_4	3	CH_tca_292	3	4	0.0000564063

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V