Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0006281
- Description
- DNA repair
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_2 | 1 | CH_egr_611 | 4 | 8 | 0.000615872 |
Eucalyptus grandis | scaffold_2 | 1 | CH_egr_57 | 12 | 19 | 2.07931e-20 |
Eucalyptus grandis | scaffold_2 | 4 | CH_egr_54 | 12 | 19 | 2.07931e-20 |
Glycine max | Gm04 | 6 | CH_gma_73 | 10 | 40 | 0.00000973736 |
Glycine max | Gm10 | 6 | CH_gma_88 | 18 | 207 | 0.0000705519 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000012 | single strand break repair | 2 |
GO:0000724 | double-strand break repair via homologous recombination | 9 |
GO:0006282 | regulation of DNA repair | 5 |
GO:0006284 | base-excision repair | 8 |
GO:0006294 | nucleotide-excision repair, preincision complex assembly | 2 |
GO:0006298 | mismatch repair | 7 |
GO:0006302 | double-strand break repair | 1 |
GO:0006303 | double-strand break repair via nonhomologous end joining | 12 |
GO:0045739 | positive regulation of DNA repair | 2 |
GO:0051103 | DNA ligation involved in DNA repair | 11 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |