PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Malus domestica	2	1	CH_mdo_229	3	4	0.00066902
Oryza sativa ssp. japonica	5	4	CH_osa_117	44	300	0.0000236612
Oryza sativa ssp. japonica	5	5	CH_osa_127	44	300	0.0000305633
Oryza sativa ssp. japonica	5	6	CH_osa_137	44	300	0.0000336155

GO term	Description	Number of clusters
GO:0006269	DNA replication, synthesis of RNA primer	8
GO:0006271	DNA strand elongation involved in DNA replication	2
GO:0006278	RNA-dependent DNA replication	14
GO:0006279	premeiotic DNA replication	2
GO:0032877	positive regulation of DNA endoreduplication	2
GO:0033567	DNA replication, Okazaki fragment processing	6
GO:0051973	positive regulation of telomerase activity	4
GO:0090296	regulation of mitochondrial DNA replication	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V