Functional clusters   top

Information

Type
GO term
Identifier
GO:0006259
Description
DNA metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Chlamydomonas reinhardtiichromosome_16CH_cre_1611170.0000000465616
Chlamydomonas reinhardtiichromosome_66CH_cre_14452930.0000000000323662
Cucumis meloCM3.5_scaffold000106CH_cme_3110190.0000000952248
Oryza sativa ssp. japonica101CH_osa_29925800.000125099
Oryza sativa ssp. japonica71CH_osa_19219410.00000438747
Oryza sativa ssp. japonica81CH_osa_23426800.0000230075
Oryza sativa ssp. japonica91CH_osa_20522560.00000767442
Oryza sativa ssp. japonica102CH_osa_34725800.000225909
Oryza sativa ssp. japonica72CH_osa_19919410.00000722199
Oryza sativa ssp. japonica82CH_osa_26326800.0000428699
Oryza sativa ssp. japonica92CH_osa_21522560.0000133797
Oryza sativa ssp. japonica103CH_osa_43718430.000384964
Oryza sativa ssp. japonica103CH_osa_27227800.000024454
Oryza sativa ssp. japonica73CH_osa_26319410.0000174985
Oryza sativa ssp. japonica93CH_osa_30322560.0000358331
Oryza sativa ssp. japonica114CH_osa_71592710.000000139705
Oryza sativa ssp. japonica124CH_osa_40722910.00000000000043245
Oryza sativa ssp. japonica124CH_osa_126562890.0000538691
Oryza sativa ssp. japonica124CH_osa_130562970.000152394
Oryza sativa ssp. japonica74CH_osa_9519410.00000438747
Oryza sativa ssp. japonica94CH_osa_9922560.00000767442
Oryza sativa ssp. japonica115CH_osa_85592710.000000456202
Oryza sativa ssp. japonica125CH_osa_45722910.00000000000202689
Oryza sativa ssp. japonica125CH_osa_146562890.000152974
Oryza sativa ssp. japonica125CH_osa_160562970.000424189
Oryza sativa ssp. japonica75CH_osa_129552700.0000317564
Oryza sativa ssp. japonica75CH_osa_10519410.00000722199
Oryza sativa ssp. japonica95CH_osa_11422560.0000133797
Oryza sativa ssp. japonica116CH_osa_82642710.0000000123486
Oryza sativa ssp. japonica126CH_osa_44782910.000000000000012369
Oryza sativa ssp. japonica126CH_osa_155592970.000150677
Oryza sativa ssp. japonica26CH_osa_131602900.0000213622
Oryza sativa ssp. japonica36CH_osa_96512050.000000406721
Oryza sativa ssp. japonica46CH_osa_187572960.000886526
Oryza sativa ssp. japonica56CH_osa_53752920.000000000000818862
Oryza sativa ssp. japonica76CH_osa_12819410.0000174985
Oryza sativa ssp. japonica96CH_osa_13822560.0000358331
Oryza sativa ssp. japonica77CH_osa_2119410.00000474874
Oryza sativa ssp. japonica87CH_osa_4524800.000986101
Oryza sativa ssp. japonica97CH_osa_2322560.00000662606
Oryza sativa ssp. japonica78CH_osa_1819410.00000773749
Oryza sativa ssp. japonica98CH_osa_2122560.0000114357
Oryza sativa ssp. japonica79CH_osa_1919410.0000124634
Oryza sativa ssp. japonica99CH_osa_2422560.0000194717
Oryza sativa ssp. japonica1110CH_osa_29562710.00000714705
Oryza sativa ssp. japonica1210CH_osa_12672900.000000000475293
Oryza sativa ssp. japonica1210CH_osa_49573040.000218602
Oryza sativa ssp. japonica1210CH_osa_33593050.0000150392
Oryza sativa ssp. japonica710CH_osa_37532700.0000411216
Oryza sativa ssp. japonica710CH_osa_2419410.00000474874
Oryza sativa ssp. japonica910CH_osa_2822560.00000662606
Oryza sativa ssp. japonica1111CH_osa_45562710.0000206007
Oryza sativa ssp. japonica1211CH_osa_15672900.00000000183555
Oryza sativa ssp. japonica711CH_osa_43552700.0000132053
Oryza sativa ssp. japonica711CH_osa_3719410.00000773749
Oryza sativa ssp. japonica911CH_osa_4122560.0000114357
Oryza sativa ssp. japonica1112CH_osa_36582710.00000696626
Oryza sativa ssp. japonica1212CH_osa_14692900.000000000628862
Oryza sativa ssp. japonica1212CH_osa_60603040.0000932106
Oryza sativa ssp. japonica412CH_osa_70562850.000205422
Oryza sativa ssp. japonica412CH_osa_72593160.000278287
Oryza sativa ssp. japonica712CH_osa_53552700.0000364811
Oryza sativa ssp. japonica712CH_osa_4019410.0000124634
Oryza sativa ssp. japonica912CH_osa_4522560.0000194717
Prunus persicascaffold_44CH_ppe_120131070.000900059
Solanum lycopersicumch113CH_sly_38515760.0000445435
Solanum lycopersicumch116CH_sly_95251910.0000020307
Solanum tuberosumchr013CH_stu_52115800.0000319281
Solanum tuberosumchr016CH_stu_146201260.00000124895
Theobroma cacaoscaffold_13CH_tca_12621600.0000000141272
Theobroma cacaoscaffold_53CH_tca_17522760.000000306724
Theobroma cacaoscaffold_63CH_tca_23419640.00000481529
Theobroma cacaoscaffold_73CH_tca_25420740.0000103675
Theobroma cacaoscaffold_83CH_tca_25312250.0000102553
Theobroma cacaoscaffold_16CH_tca_41321230.000000000187255
Theobroma cacaoscaffold_10r6CH_tca_51432370.00000000491982
Theobroma cacaoscaffold_26CH_tca_81402540.00000328532
Theobroma cacaoscaffold_36CH_tca_86412820.0000233428
Theobroma cacaoscaffold_46CH_tca_64402310.000000159634
Theobroma cacaoscaffold_56CH_tca_43512970.000000000278355
Theobroma cacaoscaffold_66CH_tca_62392170.0000000889395
Theobroma cacaoscaffold_76CH_tca_44502950.000000000496331
Theobroma cacaoscaffold_86CH_tca_128332270.000917307
Theobroma cacaoscaffold_86CH_tca_8412250.0000102553
Theobroma cacaoscaffold_96CH_tca_89321890.000037104

Available child term results

GO term Description Number of clusters
GO:0000012single strand break repair2
GO:0000712resolution of meiotic recombination intermediates5
GO:0000723telomere maintenance16
GO:0000724double-strand break repair via homologous recombination9
GO:0006260DNA replication4
GO:0006269DNA replication, synthesis of RNA primer8
GO:0006271DNA strand elongation involved in DNA replication2
GO:0006278RNA-dependent DNA replication14
GO:0006279premeiotic DNA replication2
GO:0006281DNA repair5
GO:0006282regulation of DNA repair5
GO:0006284base-excision repair8
GO:0006294nucleotide-excision repair, preincision complex assembly2
GO:0006298mismatch repair7
GO:0006302double-strand break repair1
GO:0006303double-strand break repair via nonhomologous end joining12
GO:0006306DNA methylation5
GO:0006308DNA catabolic process16
GO:0006310DNA recombination48
GO:0006312mitotic recombination2
GO:0006323DNA packaging11
GO:0007076mitotic chromosome condensation4
GO:0010032meiotic chromosome condensation3
GO:0010424DNA methylation on cytosine within a CG sequence4
GO:0015074DNA integration46
GO:0016444somatic cell DNA recombination6
GO:0031497chromatin assembly23
GO:0031507heterochromatin assembly1
GO:0032508DNA duplex unwinding3
GO:0032877positive regulation of DNA endoreduplication2
GO:0033567DNA replication, Okazaki fragment processing6
GO:0043247telomere maintenance in response to DNA damage8
GO:0044030regulation of DNA methylation11
GO:0045128negative regulation of reciprocal meiotic recombination4
GO:0045739positive regulation of DNA repair2
GO:0045910negative regulation of DNA recombination2
GO:0051103DNA ligation involved in DNA repair11
GO:0051973positive regulation of telomerase activity4
GO:0071103DNA conformation change7
GO:0090296regulation of mitochondrial DNA replication3

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V