PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00131	3	CH_atr_143	3	4	0.000000749532
Arabidopsis thaliana	4	2	CH_ath_426	2	2	0.000892804
Arabidopsis thaliana	4	7	CH_ath_38	2	2	0.000954138
Arabidopsis thaliana	4	8	CH_ath_39	2	2	0.000954138
Beta vulgaris	Bvchr7.sca021	3	CH_bvu_358	2	2	0.000965624
Medicago truncatula	chr8	9	CH_mtr_28	2	2	0.000496393
Physcomitrella patens	scaffold_165	1	CH_ppa_23	3	5	0.00000786428
Physcomitrella patens	scaffold_165	2	CH_ppa_22	3	5	0.00000786428
Physcomitrella patens	scaffold_165	3	CH_ppa_40	3	5	0.00000786428
Vitis vinifera	chr9	3	CH_vvi_459	2	2	0.000752106
Vitis vinifera	chr9	9	CH_vvi_17	2	2	0.000825866

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V