PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006075
Description: (1->3)-beta-D-glucan biosynthetic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00014	3	CH_atr_168	3	3	0.00000267992
Amborella trichopoda	scaffold00044	3	CH_atr_265	3	8	0.000149824
Arabidopsis lyrata	scaffold_4	3	CH_aly_275	3	6	0.000136159
Brassica rapa	A05	3	CH_bra_202	3	5	0.0000490889
Carica papaya	supercontig_4	3	CH_cpa_30	5	9	0.000000000107909
Carica papaya	supercontig_50	3	CH_cpa_144	3	4	0.0000161675
Citrullus lanatus	Chr3	3	CH_cla_2	16	21	2.37152e-42
Citrullus lanatus	Chr3	6	CH_cla_2	16	21	2.37152e-42
Citrullus lanatus	Chr3	9	CH_cla_2	4	19	0.000000937824
Citrus sinensis	scaffold00057	3	CH_csi_61	4	6	0.0000000499424
Citrus sinensis	scaffold00173	3	CH_csi_108	3	3	0.00000575451
Cucumis melo	CM3.5_scaffold00017	3	CH_cme_186	3	3	0.0000257088
Cucumis melo	CM3.5_scaffold00025	3	CH_cme_51	6	9	0.00000000000146759
Cucumis melo	CM3.5_scaffold00059	3	CH_cme_34	7	13	0.0000000000000240515
Cucumis melo	CM3.5_scaffold00060	3	CH_cme_94	4	4	0.0000000236167
Cucumis melo	CM3.5_scaffold00089	3	CH_cme_248	3	4	0.00010276
Eucalyptus grandis	scaffold_1	1	CH_egr_349	4	11	0.000000602757
Eucalyptus grandis	scaffold_1	2	CH_egr_444	4	11	0.000000602757
Glycine max	Gm08	1	CH_gma_288	3	8	0.000232396
Glycine max	Gm08	2	CH_gma_361	3	8	0.000232396
Glycine max	Gm08	3	CH_gma_526	3	8	0.000569193
Gossypium raimondii	Chr07	3	CH_gra_213	4	21	0.0000162828
Malus domestica	9	1	CH_mdo_102	3	4	0.00000869076
Malus domestica	9	2	CH_mdo_118	3	4	0.00000869076
Malus domestica	14	3	CH_mdo_45	4	4	0.00000000373247
Manihot esculenta	scaffold03542	3	CH_mes_11	6	6	0.00000000000000321871
Manihot esculenta	scaffold12794	3	CH_mes_49	4	4	0.00000000785014
Oryza sativa ssp. japonica	1	3	CH_osa_118	4	6	0.00000000278969
Ostreococcus lucimarinus	Chr_7	1	CH_olu_13	2	2	0.000256246
Ostreococcus lucimarinus	Chr_7	2	CH_olu_15	2	2	0.000256246
Ostreococcus lucimarinus	Chr_7	3	CH_olu_15	2	2	0.000256246
Ricinus communis	29983	1	CH_rco_207	2	2	0.000981981
Solanum lycopersicum	ch01	3	CH_sly_263	3	3	0.00000108632
Theobroma cacao	scaffold_9	3	CH_tca_180	4	11	0.000000427164
Zea mays	3	3	CH_zma_135	4	15	0.00000459216
Zea mays	5	3	CH_zma_142	3	3	0.00000671913

Available child term results

GO term	Description	Number of clusters
GO:0032953	regulation of (1->3)-beta-D-glucan biosynthetic process	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V