Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Functional clusters 
Information
- Type
- GO term
- Identifier
- GO:0006032
- Description
- chitin catabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | scaffold00001 | 1 | CH_atr_22 | 7 | 12 | 9.7732e-17 |
| Amborella trichopoda | scaffold00001 | 2 | CH_atr_19 | 7 | 12 | 9.7732e-17 |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_9 | 8 | 12 | 4.71012e-20 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_130 | 3 | 3 | 0.0000057943 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_13 | 8 | 12 | 4.71012e-20 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_165 | 3 | 3 | 0.0000057943 |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_102 | 4 | 5 | 0.0000000225868 |
| Arabidopsis thaliana | 4 | 1 | CH_ath_10 | 9 | 11 | 2.5086e-23 |
| Arabidopsis thaliana | 4 | 2 | CH_ath_15 | 9 | 11 | 2.5086e-23 |
| Arabidopsis thaliana | 4 | 3 | CH_ath_18 | 9 | 11 | 5.75441e-23 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_33 | 5 | 5 | 0.00000000000856609 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_50 | 5 | 5 | 0.00000000000856609 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_58 | 5 | 5 | 0.0000000000167457 |
| Carica papaya | supercontig_9 | 1 | CH_cpa_26 | 4 | 6 | 0.00000000288152 |
| Carica papaya | supercontig_9 | 2 | CH_cpa_24 | 4 | 6 | 0.00000000288152 |
| Carica papaya | supercontig_9 | 3 | CH_cpa_42 | 4 | 6 | 0.00000000518633 |
| Citrullus lanatus | Chr1 | 1 | CH_cla_19 | 6 | 6 | 0.000000000000005456 |
| Citrullus lanatus | Chr11 | 1 | CH_cla_34 | 5 | 5 | 0.00000000000801146 |
| Citrullus lanatus | Chr1 | 2 | CH_cla_21 | 6 | 6 | 0.000000000000005456 |
| Citrullus lanatus | Chr11 | 2 | CH_cla_39 | 5 | 5 | 0.00000000000801146 |
| Citrullus lanatus | Chr6 | 2 | CH_cla_113 | 3 | 3 | 0.0000144531 |
| Citrullus lanatus | Chr11 | 3 | CH_cla_51 | 5 | 5 | 0.0000000000132477 |
| Citrullus lanatus | Chr6 | 3 | CH_cla_153 | 3 | 3 | 0.0000192454 |
| Citrus sinensis | scaffold00023 | 1 | CH_csi_76 | 3 | 3 | 0.00000442654 |
| Citrus sinensis | scaffold00068 | 1 | CH_csi_97 | 4 | 27 | 0.0000400944 |
| Citrus sinensis | scaffold00023 | 2 | CH_csi_84 | 3 | 3 | 0.00000442654 |
| Citrus sinensis | scaffold00068 | 2 | CH_csi_104 | 4 | 27 | 0.0000400944 |
| Citrus sinensis | scaffold00068 | 3 | CH_csi_138 | 3 | 5 | 0.0000574884 |
| Cucumis melo | CM3.5_scaffold00007 | 1 | CH_cme_16 | 6 | 6 | 2.96055e-16 |
| Cucumis melo | CM3.5_scaffold00012 | 1 | CH_cme_91 | 3 | 3 | 0.00000399914 |
| Cucumis melo | CM3.5_scaffold00007 | 2 | CH_cme_17 | 6 | 6 | 2.96055e-16 |
| Cucumis melo | CM3.5_scaffold00012 | 2 | CH_cme_105 | 3 | 3 | 0.00000399914 |
| Cucumis melo | CM3.5_scaffold00012 | 3 | CH_cme_164 | 3 | 3 | 0.00000597674 |
| Fragaria vesca | LG1 | 1 | CH_fve_153 | 3 | 4 | 0.0000208382 |
| Fragaria vesca | scf0513070 | 1 | CH_fve_225 | 3 | 8 | 0.000291281 |
| Fragaria vesca | LG1 | 2 | CH_fve_170 | 3 | 4 | 0.0000208382 |
| Fragaria vesca | scf0513070 | 2 | CH_fve_276 | 3 | 8 | 0.000291281 |
| Fragaria vesca | LG1 | 3 | CH_fve_64 | 5 | 6 | 0.0000000000245801 |
| Fragaria vesca | LG1 | 3 | CH_fve_104 | 4 | 4 | 0.0000000068445 |
| Fragaria vesca | scf0513070 | 3 | CH_fve_420 | 3 | 8 | 0.000608071 |
| Gossypium raimondii | Chr01 | 1 | CH_gra_57 | 5 | 5 | 0.00000000000725912 |
| Gossypium raimondii | Chr05 | 1 | CH_gra_158 | 3 | 3 | 0.0000156467 |
| Gossypium raimondii | Chr06 | 1 | CH_gra_108 | 4 | 5 | 0.0000000543113 |
| Gossypium raimondii | Chr13 | 1 | CH_gra_157 | 3 | 3 | 0.0000156467 |
| Gossypium raimondii | Chr01 | 2 | CH_gra_60 | 5 | 5 | 0.00000000000725912 |
| Gossypium raimondii | Chr05 | 2 | CH_gra_180 | 3 | 3 | 0.0000156467 |
| Gossypium raimondii | Chr06 | 2 | CH_gra_123 | 4 | 5 | 0.0000000543113 |
| Gossypium raimondii | Chr13 | 2 | CH_gra_179 | 3 | 3 | 0.0000156467 |
| Gossypium raimondii | Chr01 | 3 | CH_gra_82 | 5 | 5 | 0.0000000000123095 |
| Gossypium raimondii | Chr13 | 3 | CH_gra_219 | 3 | 3 | 0.0000212391 |
| Malus domestica | 15 | 1 | CH_mdo_130 | 3 | 7 | 0.000050849 |
| Malus domestica | 2 | 1 | CH_mdo_96 | 3 | 4 | 0.00000581534 |
| Malus domestica | 15 | 2 | CH_mdo_156 | 3 | 7 | 0.000050849 |
| Malus domestica | 2 | 2 | CH_mdo_110 | 3 | 4 | 0.00000581534 |
| Malus domestica | 15 | 3 | CH_mdo_224 | 3 | 7 | 0.000108262 |
| Medicago truncatula | chr2 | 1 | CH_mtr_347 | 3 | 4 | 0.00000999865 |
| Medicago truncatula | chr4 | 1 | CH_mtr_71 | 6 | 12 | 0.0000000000000569601 |
| Medicago truncatula | chr2 | 2 | CH_mtr_396 | 3 | 4 | 0.00000999865 |
| Medicago truncatula | chr4 | 2 | CH_mtr_81 | 6 | 12 | 0.0000000000000569601 |
| Medicago truncatula | chr4 | 3 | CH_mtr_111 | 6 | 12 | 0.000000000000166973 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_60 | 6 | 7 | 0.0000000000000229146 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_52 | 6 | 6 | 0.0000000000000032752 |
| Populus trichocarpa | Chr18 | 3 | CH_ptr_72 | 6 | 6 | 0.00000000000000927294 |
| Prunus persica | scaffold_1 | 1 | CH_ppe_172 | 5 | 29 | 0.0000010076 |
| Prunus persica | scaffold_7 | 1 | CH_ppe_22 | 7 | 7 | 3.82616e-18 |
| Prunus persica | scaffold_1 | 2 | CH_ppe_193 | 5 | 29 | 0.0000010076 |
| Prunus persica | scaffold_7 | 2 | CH_ppe_28 | 7 | 7 | 3.82616e-18 |
| Prunus persica | scaffold_7 | 3 | CH_ppe_35 | 7 | 7 | 7.27195e-18 |
| Ricinus communis | 29737 | 1 | CH_rco_25 | 5 | 5 | 0.00000000000209487 |
| Ricinus communis | 29598 | 2 | CH_rco_122 | 3 | 3 | 0.00000658158 |
| Ricinus communis | 29737 | 2 | CH_rco_25 | 5 | 5 | 0.00000000000209487 |
| Ricinus communis | 29598 | 3 | CH_rco_162 | 3 | 3 | 0.0000081004 |
| Ricinus communis | 29737 | 3 | CH_rco_41 | 5 | 5 | 0.00000000000304708 |
| Solanum lycopersicum | ch07 | 1 | CH_sly_126 | 4 | 4 | 0.00000000716794 |
| Solanum lycopersicum | ch10 | 1 | CH_sly_50 | 7 | 14 | 0.00000000000000462049 |
| Solanum lycopersicum | ch07 | 2 | CH_sly_126 | 4 | 4 | 0.00000000716794 |
| Solanum lycopersicum | ch07 | 3 | CH_sly_182 | 4 | 4 | 0.0000000231867 |
| Solanum lycopersicum | ch07 | 3 | CH_sly_448 | 3 | 4 | 0.00010769 |
| Solanum lycopersicum | ch10 | 3 | CH_sly_52 | 11 | 72 | 8.50275e-18 |
| Solanum lycopersicum | ch10 | 4 | CH_sly_36 | 11 | 72 | 0.00000000000000565758 |
| Solanum lycopersicum | ch10 | 6 | CH_sly_42 | 11 | 72 | 8.50275e-18 |
| Solanum tuberosum | chr02 | 1 | CH_stu_353 | 3 | 5 | 0.0000553824 |
| Solanum tuberosum | chr07 | 1 | CH_stu_22 | 10 | 14 | 8.23452e-27 |
| Solanum tuberosum | chr02 | 2 | CH_stu_387 | 3 | 5 | 0.0000553824 |
| Solanum tuberosum | chr07 | 2 | CH_stu_20 | 10 | 14 | 8.23452e-27 |
| Solanum tuberosum | chr02 | 3 | CH_stu_587 | 3 | 5 | 0.000111713 |
| Solanum tuberosum | chr07 | 3 | CH_stu_31 | 11 | 14 | 2.26256e-29 |
| Solanum tuberosum | chr07 | 5 | CH_stu_20 | 10 | 14 | 8.23452e-27 |
| Solanum tuberosum | chr07 | 6 | CH_stu_33 | 11 | 14 | 2.26256e-29 |
| Thellungiella parvula | ch4-6 | 1 | CH_tpa_12 | 5 | 9 | 0.0000000000753714 |
| Thellungiella parvula | ch4-6 | 2 | CH_tpa_21 | 5 | 9 | 0.0000000000753714 |
| Thellungiella parvula | ch4-6 | 3 | CH_tpa_28 | 5 | 9 | 0.000000000164403 |
| Theobroma cacao | scaffold_4 | 1 | CH_tca_98 | 4 | 6 | 0.0000000852486 |
| Theobroma cacao | scaffold_9 | 1 | CH_tca_13 | 8 | 10 | 1.97334e-20 |
| Theobroma cacao | scaffold_4 | 2 | CH_tca_112 | 4 | 6 | 0.0000000852486 |
| Theobroma cacao | scaffold_9 | 2 | CH_tca_13 | 8 | 10 | 1.97334e-20 |
| Theobroma cacao | scaffold_9 | 3 | CH_tca_18 | 8 | 10 | 4.75423e-20 |
| Vitis vinifera | chr11 | 1 | CH_vvi_47 | 7 | 14 | 0.00000000000000831644 |
| Vitis vinifera | chr5 | 1 | CH_vvi_25 | 9 | 13 | 5.15717e-22 |
| Vitis vinifera | chr11 | 2 | CH_vvi_45 | 7 | 14 | 0.00000000000000831644 |
| Vitis vinifera | chr5 | 2 | CH_vvi_25 | 9 | 13 | 5.15717e-22 |
| Vitis vinifera | chr11 | 3 | CH_vvi_49 | 8 | 14 | 2.84954e-17 |
| Vitis vinifera | chr5 | 4 | CH_vvi_43 | 10 | 204 | 0.00000000000884939 |
| Vitis vinifera | chr5 | 5 | CH_vvi_42 | 10 | 204 | 0.00000000000884939 |
| Zea mays | 2 | 1 | CH_zma_37 | 4 | 4 | 0.00000000337934 |
| Zea mays | 2 | 2 | CH_zma_37 | 4 | 4 | 0.00000000337934 |
Functional clusters experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
| 2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
| 4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
| 5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
| 6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
| 7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
| 8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
| 9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
| 10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
| 11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
| 12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
| 13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
| 14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
| 15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
| 16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
| 17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
| 18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
| 19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
| 20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |