Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0005975
- Description
- carbohydrate metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00026 | 1 | CH_atr_146 | 7 | 12 | 0.0000670019 |
Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_129 | 15 | 68 | 0.00000570243 |
Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_179 | 16 | 69 | 0.00000900626 |
Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_188 | 17 | 69 | 0.0000041041 |
Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_23 | 15 | 68 | 0.00000570243 |
Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_42 | 16 | 69 | 0.00000900626 |
Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_49 | 17 | 69 | 0.0000041041 |
Beta vulgaris | Bvchr3.sca003 | 1 | CH_bvu_125 | 7 | 9 | 0.000014247 |
Beta vulgaris | Bvchr7.sca008 | 1 | CH_bvu_171 | 13 | 57 | 0.000194703 |
Beta vulgaris | Bvchr3.sca003 | 2 | CH_bvu_158 | 7 | 9 | 0.0000304583 |
Beta vulgaris | Bvchr4.sca001 | 2 | CH_bvu_292 | 5 | 5 | 0.00082576 |
Beta vulgaris | Bvchr7.sca008 | 2 | CH_bvu_291 | 13 | 57 | 0.000704344 |
Beta vulgaris | Bvchr3.sca003 | 3 | CH_bvu_203 | 7 | 9 | 0.0000451571 |
Beta vulgaris | Bvchr7.sca008 | 4 | CH_bvu_30 | 13 | 57 | 0.000194703 |
Beta vulgaris | Bvchr3.sca006 | 5 | CH_bvu_44 | 12 | 46 | 0.000468153 |
Beta vulgaris | Bvchr7.sca008 | 5 | CH_bvu_47 | 13 | 57 | 0.000704344 |
Beta vulgaris | Bvchr3.sca006 | 6 | CH_bvu_55 | 12 | 46 | 0.000871371 |
Capsella rubella | scaffold_6 | 1 | CH_cru_174 | 8 | 16 | 0.000139396 |
Capsella rubella | scaffold_6 | 4 | CH_cru_40 | 10 | 31 | 0.000282573 |
Carica papaya | supercontig_3 | 1 | CH_cpa_27 | 8 | 8 | 0.00000000342418 |
Carica papaya | supercontig_3 | 2 | CH_cpa_29 | 8 | 8 | 0.000000013789 |
Carica papaya | supercontig_3 | 3 | CH_cpa_55 | 8 | 8 | 0.0000000282149 |
Carica papaya | supercontig_3 | 4 | CH_cpa_13 | 10 | 20 | 0.000000315006 |
Carica papaya | supercontig_3 | 6 | CH_cpa_26 | 10 | 20 | 0.00000411449 |
Citrullus lanatus | Chr1 | 1 | CH_cla_45 | 9 | 9 | 0.000000000263004 |
Citrullus lanatus | Chr1 | 2 | CH_cla_54 | 9 | 9 | 0.00000000135093 |
Eucalyptus grandis | scaffold_8 | 4 | CH_egr_220 | 10 | 33 | 0.000136206 |
Eucalyptus grandis | scaffold_8 | 6 | CH_egr_253 | 10 | 22 | 0.0000114974 |
Glycine max | Gm13 | 5 | CH_gma_89 | 10 | 25 | 0.0004472 |
Glycine max | Gm03 | 6 | CH_gma_113 | 10 | 24 | 0.000589992 |
Glycine max | Gm13 | 6 | CH_gma_119 | 10 | 25 | 0.000948221 |
Glycine max | Gm19 | 11 | CH_gma_3 | 22 | 176 | 0.000768388 |
Lotus japonicus | chr1 | 4 | CH_lja_10 | 17 | 182 | 0.0000239219 |
Lotus japonicus | chr4 | 4 | CH_lja_18 | 10 | 65 | 0.000642062 |
Lotus japonicus | chr1 | 5 | CH_lja_19 | 21 | 274 | 0.000333827 |
Lotus japonicus | chr1 | 6 | CH_lja_25 | 23 | 274 | 0.00010823 |
Malus domestica | 1 | 1 | CH_mdo_132 | 6 | 8 | 0.0000594831 |
Malus domestica | 7 | 1 | CH_mdo_254 | 6 | 11 | 0.00093389 |
Malus domestica | 1 | 2 | CH_mdo_196 | 6 | 8 | 0.000149234 |
Malus domestica | 1 | 3 | CH_mdo_310 | 6 | 8 | 0.000345221 |
Manihot esculenta | scaffold06089 | 1 | CH_mes_151 | 5 | 5 | 0.000503498 |
Manihot esculenta | scaffold12455 | 1 | CH_mes_144 | 7 | 12 | 0.000309144 |
Manihot esculenta | scaffold11106 | 4 | CH_mes_10 | 10 | 16 | 0.000000078705 |
Manihot esculenta | scaffold11106 | 5 | CH_mes_8 | 10 | 16 | 0.000000499639 |
Manihot esculenta | scaffold11106 | 6 | CH_mes_17 | 10 | 16 | 0.000000934218 |
Medicago truncatula | chr1 | 1 | CH_mtr_466 | 5 | 6 | 0.000204902 |
Medicago truncatula | chr2 | 1 | CH_mtr_213 | 9 | 18 | 0.0000000558634 |
Medicago truncatula | chr6 | 1 | CH_mtr_445 | 11 | 67 | 0.000155273 |
Medicago truncatula | chr1 | 2 | CH_mtr_635 | 5 | 6 | 0.000479179 |
Medicago truncatula | chr2 | 2 | CH_mtr_285 | 9 | 18 | 0.000000254135 |
Medicago truncatula | chr6 | 2 | CH_mtr_697 | 11 | 67 | 0.000889322 |
Medicago truncatula | chr1 | 3 | CH_mtr_870 | 5 | 6 | 0.000887501 |
Medicago truncatula | chr4 | 4 | CH_mtr_133 | 10 | 36 | 0.00000325936 |
Medicago truncatula | chr4 | 5 | CH_mtr_154 | 10 | 36 | 0.0000169006 |
Medicago truncatula | chr4 | 6 | CH_mtr_199 | 10 | 36 | 0.0000553825 |
Populus trichocarpa | Chr13 | 2 | CH_ptr_453 | 8 | 17 | 0.000796828 |
Ricinus communis | 29908 | 1 | CH_rco_181 | 7 | 14 | 0.000411717 |
Ricinus communis | 29986 | 3 | CH_rco_213 | 13 | 49 | 0.0000989823 |
Ricinus communis | 29986 | 6 | CH_rco_50 | 13 | 49 | 0.0000989823 |
Solanum tuberosum | chr04 | 1 | CH_stu_348 | 7 | 11 | 0.0000438547 |
Solanum tuberosum | chr12 | 1 | CH_stu_253 | 12 | 36 | 0.000000761166 |
Solanum tuberosum | chr12 | 2 | CH_stu_319 | 12 | 36 | 0.00000540647 |
Solanum tuberosum | chr01 | 4 | CH_stu_81 | 10 | 13 | 0.000000000501785 |
Solanum tuberosum | chr12 | 4 | CH_stu_105 | 12 | 36 | 0.000000761166 |
Solanum tuberosum | chr01 | 5 | CH_stu_87 | 10 | 13 | 0.00000000275419 |
Solanum tuberosum | chr12 | 5 | CH_stu_121 | 12 | 36 | 0.00000540647 |
Solanum tuberosum | chr12 | 6 | CH_stu_188 | 23 | 166 | 0.0000707424 |
Theobroma cacao | scaffold_3 | 1 | CH_tca_76 | 9 | 11 | 0.00000000557588 |
Theobroma cacao | scaffold_3 | 2 | CH_tca_95 | 9 | 11 | 0.0000000229869 |
Theobroma cacao | scaffold_3 | 3 | CH_tca_148 | 9 | 11 | 0.00000004097 |
Theobroma cacao | scaffold_3 | 4 | CH_tca_46 | 11 | 25 | 0.000000208916 |
Theobroma cacao | scaffold_3 | 5 | CH_tca_50 | 11 | 25 | 0.00000112896 |
Theobroma cacao | scaffold_3 | 6 | CH_tca_78 | 11 | 25 | 0.00000224176 |
Vitis vinifera | chr15 | 2 | CH_vvi_238 | 8 | 13 | 0.0000470123 |
Vitis vinifera | chr18 | 6 | CH_vvi_112 | 13 | 41 | 0.0000460803 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000024 | maltose biosynthetic process | 2 |
GO:0000025 | maltose catabolic process | 2 |
GO:0005985 | sucrose metabolic process | 2 |
GO:0005987 | sucrose catabolic process | 3 |
GO:0005992 | trehalose biosynthetic process | 1 |
GO:0005993 | trehalose catabolic process | 2 |
GO:0005997 | xylulose metabolic process | 2 |
GO:0006006 | glucose metabolic process | 3 |
GO:0006013 | mannose metabolic process | 24 |
GO:0006073 | cellular glucan metabolic process | 2 |
GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | 36 |
GO:0006096 | glycolysis | 6 |
GO:0006097 | glyoxylate cycle | 3 |
GO:0006110 | regulation of glycolysis | 2 |
GO:0006471 | protein ADP-ribosylation | 9 |
GO:0006486 | protein glycosylation | 5 |
GO:0009051 | pentose-phosphate shunt, oxidative branch | 2 |
GO:0009052 | pentose-phosphate shunt, non-oxidative branch | 3 |
GO:0009244 | lipopolysaccharide core region biosynthetic process | 3 |
GO:0009250 | glucan biosynthetic process | 6 |
GO:0010246 | rhamnogalacturonan I biosynthetic process | 4 |
GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2 |
GO:0010398 | xylogalacturonan metabolic process | 12 |
GO:0010411 | xyloglucan metabolic process | 8 |
GO:0010439 | regulation of glucosinolate biosynthetic process | 2 |
GO:0016052 | carbohydrate catabolic process | 6 |
GO:0018279 | protein N-linked glycosylation via asparagine | 2 |
GO:0019307 | mannose biosynthetic process | 5 |
GO:0019310 | inositol catabolic process | 8 |
GO:0019318 | hexose metabolic process | 5 |
GO:0019593 | mannitol biosynthetic process | 2 |
GO:0030244 | cellulose biosynthetic process | 2 |
GO:0030245 | cellulose catabolic process | 3 |
GO:0030259 | lipid glycosylation | 4 |
GO:0031222 | arabinan catabolic process | 4 |
GO:0032951 | regulation of beta-glucan biosynthetic process | 6 |
GO:0032953 | regulation of (1->3)-beta-D-glucan biosynthetic process | 2 |
GO:0033692 | cellular polysaccharide biosynthetic process | 1 |
GO:0035884 | arabinan biosynthetic process | 2 |
GO:0042732 | D-xylose metabolic process | 8 |
GO:0044262 | cellular carbohydrate metabolic process | 12 |
GO:0044264 | cellular polysaccharide metabolic process | 5 |
GO:0044723 | single-organism carbohydrate metabolic process | 8 |
GO:0045226 | extracellular polysaccharide biosynthetic process | 2 |
GO:0045493 | xylan catabolic process | 2 |
GO:0046373 | L-arabinose metabolic process | 34 |
GO:0048358 | mucilage pectin biosynthetic process | 2 |
GO:0051274 | beta-glucan biosynthetic process | 2 |
GO:0052541 | plant-type cell wall cellulose metabolic process | 2 |
GO:0052746 | inositol phosphorylation | 4 |
GO:2000082 | regulation of L-ascorbic acid biosynthetic process | 2 |
GO:2000083 | negative regulation of L-ascorbic acid biosynthetic process | 40 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |