Functional clusters   top

Information

Type
GO term
Identifier
GO:0005975
Description
carbohydrate metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodascaffold000261CH_atr_1467120.0000670019
Arabidopsis lyratascaffold_61CH_aly_12915680.00000570243
Arabidopsis lyratascaffold_62CH_aly_17916690.00000900626
Arabidopsis lyratascaffold_63CH_aly_18817690.0000041041
Arabidopsis lyratascaffold_64CH_aly_2315680.00000570243
Arabidopsis lyratascaffold_65CH_aly_4216690.00000900626
Arabidopsis lyratascaffold_66CH_aly_4917690.0000041041
Beta vulgarisBvchr3.sca0031CH_bvu_125790.000014247
Beta vulgarisBvchr7.sca0081CH_bvu_17113570.000194703
Beta vulgarisBvchr3.sca0032CH_bvu_158790.0000304583
Beta vulgarisBvchr4.sca0012CH_bvu_292550.00082576
Beta vulgarisBvchr7.sca0082CH_bvu_29113570.000704344
Beta vulgarisBvchr3.sca0033CH_bvu_203790.0000451571
Beta vulgarisBvchr7.sca0084CH_bvu_3013570.000194703
Beta vulgarisBvchr3.sca0065CH_bvu_4412460.000468153
Beta vulgarisBvchr7.sca0085CH_bvu_4713570.000704344
Beta vulgarisBvchr3.sca0066CH_bvu_5512460.000871371
Capsella rubellascaffold_61CH_cru_1748160.000139396
Capsella rubellascaffold_64CH_cru_4010310.000282573
Carica papayasupercontig_31CH_cpa_27880.00000000342418
Carica papayasupercontig_32CH_cpa_29880.000000013789
Carica papayasupercontig_33CH_cpa_55880.0000000282149
Carica papayasupercontig_34CH_cpa_1310200.000000315006
Carica papayasupercontig_36CH_cpa_2610200.00000411449
Citrullus lanatusChr11CH_cla_45990.000000000263004
Citrullus lanatusChr12CH_cla_54990.00000000135093
Eucalyptus grandisscaffold_84CH_egr_22010330.000136206
Eucalyptus grandisscaffold_86CH_egr_25310220.0000114974
Glycine maxGm135CH_gma_8910250.0004472
Glycine maxGm036CH_gma_11310240.000589992
Glycine maxGm136CH_gma_11910250.000948221
Glycine maxGm1911CH_gma_3221760.000768388
Lotus japonicuschr14CH_lja_10171820.0000239219
Lotus japonicuschr44CH_lja_1810650.000642062
Lotus japonicuschr15CH_lja_19212740.000333827
Lotus japonicuschr16CH_lja_25232740.00010823
Malus domestica11CH_mdo_132680.0000594831
Malus domestica71CH_mdo_2546110.00093389
Malus domestica12CH_mdo_196680.000149234
Malus domestica13CH_mdo_310680.000345221
Manihot esculentascaffold060891CH_mes_151550.000503498
Manihot esculentascaffold124551CH_mes_1447120.000309144
Manihot esculentascaffold111064CH_mes_1010160.000000078705
Manihot esculentascaffold111065CH_mes_810160.000000499639
Manihot esculentascaffold111066CH_mes_1710160.000000934218
Medicago truncatulachr11CH_mtr_466560.000204902
Medicago truncatulachr21CH_mtr_2139180.0000000558634
Medicago truncatulachr61CH_mtr_44511670.000155273
Medicago truncatulachr12CH_mtr_635560.000479179
Medicago truncatulachr22CH_mtr_2859180.000000254135
Medicago truncatulachr62CH_mtr_69711670.000889322
Medicago truncatulachr13CH_mtr_870560.000887501
Medicago truncatulachr44CH_mtr_13310360.00000325936
Medicago truncatulachr45CH_mtr_15410360.0000169006
Medicago truncatulachr46CH_mtr_19910360.0000553825
Populus trichocarpaChr132CH_ptr_4538170.000796828
Ricinus communis299081CH_rco_1817140.000411717
Ricinus communis299863CH_rco_21313490.0000989823
Ricinus communis299866CH_rco_5013490.0000989823
Solanum tuberosumchr041CH_stu_3487110.0000438547
Solanum tuberosumchr121CH_stu_25312360.000000761166
Solanum tuberosumchr122CH_stu_31912360.00000540647
Solanum tuberosumchr014CH_stu_8110130.000000000501785
Solanum tuberosumchr124CH_stu_10512360.000000761166
Solanum tuberosumchr015CH_stu_8710130.00000000275419
Solanum tuberosumchr125CH_stu_12112360.00000540647
Solanum tuberosumchr126CH_stu_188231660.0000707424
Theobroma cacaoscaffold_31CH_tca_769110.00000000557588
Theobroma cacaoscaffold_32CH_tca_959110.0000000229869
Theobroma cacaoscaffold_33CH_tca_1489110.00000004097
Theobroma cacaoscaffold_34CH_tca_4611250.000000208916
Theobroma cacaoscaffold_35CH_tca_5011250.00000112896
Theobroma cacaoscaffold_36CH_tca_7811250.00000224176
Vitis viniferachr152CH_vvi_2388130.0000470123
Vitis viniferachr186CH_vvi_11213410.0000460803

Available child term results

GO term Description Number of clusters
GO:0000024maltose biosynthetic process2
GO:0000025maltose catabolic process2
GO:0005985sucrose metabolic process2
GO:0005987sucrose catabolic process3
GO:0005992trehalose biosynthetic process1
GO:0005993trehalose catabolic process2
GO:0005997xylulose metabolic process2
GO:0006006glucose metabolic process3
GO:0006013mannose metabolic process24
GO:0006073cellular glucan metabolic process2
GO:0006075(1->3)-beta-D-glucan biosynthetic process36
GO:0006096glycolysis6
GO:0006097glyoxylate cycle3
GO:0006110regulation of glycolysis2
GO:0006471protein ADP-ribosylation9
GO:0006486protein glycosylation5
GO:0009051pentose-phosphate shunt, oxidative branch2
GO:0009052pentose-phosphate shunt, non-oxidative branch3
GO:0009244lipopolysaccharide core region biosynthetic process3
GO:0009250glucan biosynthetic process6
GO:0010246rhamnogalacturonan I biosynthetic process4
GO:0010322regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2
GO:0010398xylogalacturonan metabolic process12
GO:0010411xyloglucan metabolic process8
GO:0010439regulation of glucosinolate biosynthetic process2
GO:0016052carbohydrate catabolic process6
GO:0018279protein N-linked glycosylation via asparagine2
GO:0019307mannose biosynthetic process5
GO:0019310inositol catabolic process8
GO:0019318hexose metabolic process5
GO:0019593mannitol biosynthetic process2
GO:0030244cellulose biosynthetic process2
GO:0030245cellulose catabolic process3
GO:0030259lipid glycosylation4
GO:0031222arabinan catabolic process4
GO:0032951regulation of beta-glucan biosynthetic process6
GO:0032953regulation of (1->3)-beta-D-glucan biosynthetic process2
GO:0033692cellular polysaccharide biosynthetic process1
GO:0035884arabinan biosynthetic process2
GO:0042732D-xylose metabolic process8
GO:0044262cellular carbohydrate metabolic process12
GO:0044264cellular polysaccharide metabolic process5
GO:0044723single-organism carbohydrate metabolic process8
GO:0045226extracellular polysaccharide biosynthetic process2
GO:0045493xylan catabolic process2
GO:0046373L-arabinose metabolic process34
GO:0048358mucilage pectin biosynthetic process2
GO:0051274beta-glucan biosynthetic process2
GO:0052541plant-type cell wall cellulose metabolic process2
GO:0052746inositol phosphorylation4
GO:2000082regulation of L-ascorbic acid biosynthetic process2
GO:2000083negative regulation of L-ascorbic acid biosynthetic process40

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V