PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005886
Description: plasma membrane

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	2	CH_aly_273	12	22	0.000319187
Arabidopsis lyrata	scaffold_8	3	CH_aly_350	12	22	0.000461063
Arabidopsis lyrata	scaffold_8	5	CH_aly_74	12	22	0.000319187
Arabidopsis lyrata	scaffold_8	6	CH_aly_93	12	22	0.000461063
Arabidopsis thaliana	1	1	CH_ath_335	15	29	0.000620609
Arabidopsis thaliana	1	4	CH_ath_121	15	29	0.000620609
Arabidopsis thaliana	1	4	CH_ath_126	12	19	0.00082113
Arabidopsis thaliana	3	5	CH_ath_139	33	98	0.000421072
Arabidopsis thaliana	3	6	CH_ath_141	33	98	0.000423696
Eucalyptus grandis	scaffold_11	2	CH_egr_639	22	79	0.000108295
Eucalyptus grandis	scaffold_5	2	CH_egr_402	11	13	0.000000184834
Eucalyptus grandis	scaffold_9	2	CH_egr_529	8	8	0.0000100979
Eucalyptus grandis	scaffold_11	3	CH_egr_776	22	79	0.00021123
Eucalyptus grandis	scaffold_2	3	CH_egr_67	28	35	1.586e-22
Eucalyptus grandis	scaffold_7	3	CH_egr_545	19	47	0.0000017224
Eucalyptus grandis	scaffold_9	3	CH_egr_605	8	8	0.0000135262
Eucalyptus grandis	scaffold_5	5	CH_egr_186	11	13	0.000000184834
Eucalyptus grandis	scaffold_6	5	CH_egr_294	46	295	0.000861749
Eucalyptus grandis	scaffold_2	6	CH_egr_60	28	35	1.586e-22
Eucalyptus grandis	scaffold_7	6	CH_egr_232	19	47	0.0000017224
Fragaria vesca	scf0513158	3	CH_fve_386	6	6	0.000435738
Glycine max	Gm13	1	CH_gma_121	4	4	0.000000109526
Malus domestica	2	1	CH_mdo_251	2	3	0.000830808
Medicago truncatula	chr7	11	CH_mtr_13	26	278	0.000307853
Medicago truncatula	chr7	12	CH_mtr_18	26	278	0.000560077
Prunus persica	scaffold_1	3	CH_ppe_254	16	35	0.00000260856
Prunus persica	scaffold_2	3	CH_ppe_485	14	36	0.000508482
Prunus persica	scaffold_3	5	CH_ppe_107	36	199	0.000139438
Prunus persica	scaffold_1	6	CH_ppe_109	16	35	0.00000260856
Prunus persica	scaffold_3	6	CH_ppe_145	36	199	0.000388348
Solanum lycopersicum	ch04	3	CH_sly_568	13	33	0.000474471
Solanum lycopersicum	ch04	6	CH_sly_158	13	33	0.000474471
Solanum tuberosum	chr04	3	CH_stu_647	11	21	0.000208971
Solanum tuberosum	chr04	6	CH_stu_204	11	21	0.000208971
Theobroma cacao	scaffold_2	3	CH_tca_442	7	8	0.000732914

Available child term results

GO term	Description	Number of clusters
GO:0005901	caveola	4
GO:0008076	voltage-gated potassium channel complex	3
GO:0009897	external side of plasma membrane	1
GO:0009925	basal plasma membrane	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V