Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0005856
- Description
- cytoskeleton
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_5 | 3 | CH_egr_781 | 7 | 48 | 0.000223981 |
Eucalyptus grandis | scaffold_5 | 6 | CH_egr_228 | 14 | 232 | 0.00000108786 |
Gossypium raimondii | Chr03 | 3 | CH_gra_280 | 5 | 8 | 0.000105948 |
Solanum tuberosum | chr04 | 3 | CH_stu_92 | 13 | 29 | 1.44492e-16 |
Solanum tuberosum | chr04 | 6 | CH_stu_69 | 13 | 29 | 1.44492e-16 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000922 | spindle pole | 6 |
GO:0000930 | gamma-tubulin complex | 2 |
GO:0005815 | microtubule organizing center | 3 |
GO:0005819 | spindle | 3 |
GO:0005871 | kinesin complex | 19 |
GO:0005874 | microtubule | 2 |
GO:0005884 | actin filament | 5 |
GO:0008290 | F-actin capping protein complex | 4 |
GO:0015629 | actin cytoskeleton | 7 |
GO:0016459 | myosin complex | 16 |
GO:0030981 | cortical microtubule cytoskeleton | 8 |
GO:0070652 | HAUS complex | 13 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |