PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	1	CH_ath_250	3	5	0.0000817637
Arabidopsis thaliana	5	2	CH_ath_291	3	5	0.0000817637
Arabidopsis thaliana	5	3	CH_ath_325	3	5	0.000173887
Cucumis melo	CM3.5_scaffold00001	1	CH_cme_139	3	6	0.000098319
Eucalyptus grandis	scaffold_7	1	CH_egr_530	3	8	0.000160331
Eucalyptus grandis	scaffold_7	2	CH_egr_653	3	8	0.000160331
Fragaria vesca	LG2	3	CH_fve_350	3	5	0.000266401
Solanum lycopersicum	ch08	1	CH_sly_391	3	8	0.000488589
Solanum lycopersicum	ch08	2	CH_sly_439	3	8	0.000488589
Solanum lycopersicum	ch08	3	CH_sly_619	3	8	0.000717064

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V