PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_11	1	CH_cpa_157	3	3	0.000413685
Chlamydomonas reinhardtii	chromosome_1	3	CH_cre_97	4	4	0.000534693
Eucalyptus grandis	scaffold_11	2	CH_egr_617	5	5	0.0000740305
Eucalyptus grandis	scaffold_8	2	CH_egr_20	22	24	5.09262e-32
Eucalyptus grandis	scaffold_11	3	CH_egr_711	5	5	0.0000990845
Eucalyptus grandis	scaffold_8	3	CH_egr_29	22	24	1.86394e-31
Eucalyptus grandis	scaffold_8	5	CH_egr_24	22	24	5.09262e-32
Eucalyptus grandis	scaffold_8	6	CH_egr_32	22	24	1.86394e-31
Gossypium raimondii	Chr10	2	CH_gra_236	10	38	0.000111415
Gossypium raimondii	Chr10	5	CH_gra_74	10	38	0.000111415
Malus domestica	12	1	CH_mdo_241	3	7	0.000796778
Medicago truncatula	chr2	2	CH_mtr_262	9	24	0.00000011259
Medicago truncatula	chr2	3	CH_mtr_274	10	27	0.0000000140607
Medicago truncatula	chr4	3	CH_mtr_245	9	17	0.00000000399937
Medicago truncatula	chr2	6	CH_mtr_118	10	27	0.0000000140607
Medicago truncatula	chr4	6	CH_mtr_210	10	61	0.000106523
Medicago truncatula	chr5	6	CH_mtr_148	10	41	0.00000162141
Solanum tuberosum	chr09	2	CH_stu_281	6	6	0.00000119698
Solanum tuberosum	chr09	3	CH_stu_411	6	6	0.0000016241
Thellungiella parvula	ch5-7	1	CH_tpa_86	3	3	0.0000566888
Thellungiella parvula	ch7-4	5	CH_tpa_4	10	10	0.00000000000253337
Thellungiella parvula	ch7-4	6	CH_tpa_6	10	10	0.00000000000396639
Theobroma cacao	scaffold_3	1	CH_tca_313	3	5	0.000987017

GO term	Description	Number of clusters
GO:0005787	signal peptidase complex	3
GO:0005788	endoplasmic reticulum lumen	2
GO:0008250	oligosaccharyltransferase complex	2
GO:0031227	intrinsic to endoplasmic reticulum membrane	5
GO:0042406	extrinsic to endoplasmic reticulum membrane	1
GO:0042765	GPI-anchor transamidase complex	2
GO:0071458	integral to cytosolic side of endoplasmic reticulum membrane	2
GO:0072546	ER membrane protein complex	17

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V