PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_3	2	CH_egr_578	4	4	0.0000518021
Eucalyptus grandis	scaffold_8	2	CH_egr_711	4	5	0.000257725
Eucalyptus grandis	scaffold_8	2	CH_egr_427	5	5	0.000000319336
Eucalyptus grandis	scaffold_8	2	CH_egr_426	5	5	0.000000319336
Eucalyptus grandis	scaffold_3	3	CH_egr_656	4	4	0.0000537706
Eucalyptus grandis	scaffold_8	3	CH_egr_486	5	5	0.000000334613
Eucalyptus grandis	scaffold_8	3	CH_egr_792	4	5	0.000267507
Eucalyptus grandis	scaffold_8	3	CH_egr_487	5	5	0.000000334613
Gossypium raimondii	Chr03	2	CH_gra_133	5	5	0.000000468274
Gossypium raimondii	Chr03	3	CH_gra_159	5	5	0.000000497412
Populus trichocarpa	Chr19	2	CH_ptr_282	4	4	0.0000451186
Populus trichocarpa	Chr19	3	CH_ptr_361	4	4	0.0000474928

GO term	Description	Number of clusters
GO:0005778	peroxisomal membrane	6
GO:0005779	integral to peroxisomal membrane	5

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V