PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00046	1	CH_atr_199	3	4	0.000429772
Amborella trichopoda	scaffold00089	3	CH_atr_160	5	13	0.00000189444
Carica papaya	supercontig_146	3	CH_cpa_113	5	8	0.00000307155
Carica papaya	supercontig_46	3	CH_cpa_138	4	4	0.0000116669
Carica papaya	supercontig_98	3	CH_cpa_12	11	16	2.21501e-18
Carica papaya	supercontig_98	6	CH_cpa_10	11	16	2.21501e-18
Carica papaya	supercontig_46	9	CH_cpa_4	4	4	0.00000181433
Cucumis melo	CM3.5_scaffold00006	3	CH_cme_108	5	5	0.0000000450613
Cucumis melo	CM3.5_scaffold01596	3	CH_cme_36	9	14	0.0000000000000293742
Fragaria vesca	LG6	1	CH_fve_252	3	4	0.000563723
Malus domestica	15	3	CH_mdo_111	5	7	0.000000601775
Vitis vinifera	chr2	3	CH_vvi_414	4	7	0.000363125

GO term	Description	Number of clusters
GO:0005544	calcium-dependent phospholipid binding	87
GO:0005545	1-phosphatidylinositol binding	1
GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	4
GO:0008429	phosphatidylethanolamine binding	7
GO:0032266	phosphatidylinositol-3-phosphate binding	3
GO:0035091	phosphatidylinositol binding	4
GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V