PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005525
Description: GTP binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00004	3	CH_atr_306	4	5	0.00037915
Arabidopsis lyrata	scaffold_1	1	CH_aly_41	8	11	0.000000000182368
Arabidopsis lyrata	scaffold_1	2	CH_aly_52	8	11	0.000000000216167
Arabidopsis lyrata	scaffold_1	3	CH_aly_67	8	11	0.000000000434193
Arabidopsis lyrata	scaffold_6	3	CH_aly_222	5	6	0.0000174763
Arabidopsis thaliana	1	1	CH_ath_30	9	12	0.0000000000014466
Arabidopsis thaliana	1	2	CH_ath_50	9	12	0.0000000000015417
Arabidopsis thaliana	1	3	CH_ath_56	9	12	0.00000000000174873
Arabidopsis thaliana	1	4	CH_ath_12	10	18	0.00000000000227658
Arabidopsis thaliana	1	5	CH_ath_20	10	18	0.00000000000244317
Arabidopsis thaliana	1	6	CH_ath_29	10	18	0.00000000000280959
Brassica rapa	A06	3	CH_bra_292	4	4	0.000446531
Capsella rubella	scaffold_1	1	CH_cru_69	6	6	0.0000000177245
Capsella rubella	scaffold_6	1	CH_cru_187	4	4	0.000205209
Capsella rubella	scaffold_1	2	CH_cru_99	6	6	0.0000000214851
Capsella rubella	scaffold_6	2	CH_cru_281	4	4	0.000233175
Capsella rubella	scaffold_1	3	CH_cru_115	6	6	0.0000000230565
Capsella rubella	scaffold_6	3	CH_cru_316	4	4	0.000244365
Eucalyptus grandis	scaffold_1	2	CH_egr_10	20	21	1.08812e-37
Eucalyptus grandis	scaffold_1	2	CH_egr_327	7	10	0.00000000499119
Eucalyptus grandis	scaffold_1	5	CH_egr_12	20	21	1.08812e-37
Medicago truncatula	chr8	1	CH_mtr_450	4	5	0.000171449
Medicago truncatula	chr8	2	CH_mtr_568	4	5	0.000192048
Medicago truncatula	chr4	3	CH_mtr_723	5	12	0.000271253
Medicago truncatula	chr2	4	CH_mtr_96	15	224	0.0000000278573
Solanum lycopersicum	ch11	3	CH_sly_614	6	22	0.000619616
Solanum tuberosum	chr11	1	CH_stu_384	4	4	0.000134825
Solanum tuberosum	chr11	2	CH_stu_432	4	4	0.000149005
Thellungiella parvula	ch1-1	1	CH_tpa_138	4	5	0.000647373

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V