PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005516
Description: calmodulin binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00032	3	CH_atr_342	3	3	0.000740998
Arabidopsis lyrata	scaffold_7	3	CH_aly_46	7	7	0.00000000000358541
Arabidopsis lyrata	scaffold_7	3	CH_aly_271	4	5	0.000126271
Arabidopsis thaliana	3	3	CH_ath_310	5	8	0.000104404
Arabidopsis thaliana	4	3	CH_ath_80	7	7	0.000000000148468
Arabidopsis thaliana	5	3	CH_ath_230	6	11	0.00000749485
Beta vulgaris	Bvchr9.sca026	3	CH_bvu_5	12	12	3.78681e-23
Beta vulgaris	Bvchr9_un.sca001	3	CH_bvu_313	4	6	0.000428124
Beta vulgaris	Bvchr9.sca026	6	CH_bvu_5	12	12	3.78681e-23
Brassica rapa	A01	3	CH_bra_61	6	6	0.00000000588876
Brassica rapa	A02	3	CH_bra_3	11	11	1.07892e-19
Brassica rapa	A02	3	CH_bra_222	4	4	0.000113338
Brassica rapa	A03	3	CH_bra_25	8	9	0.00000000000269891
Brassica rapa	A08	3	CH_bra_137	5	6	0.00000488056
Brassica rapa	A10	3	CH_bra_4	11	12	1.28631e-18
Brassica rapa	A02	6	CH_bra_2	11	11	1.07892e-19
Brassica rapa	A03	6	CH_bra_45	11	144	0.000425143
Brassica rapa	A10	6	CH_bra_3	11	12	1.28631e-18
Capsella rubella	scaffold_3	3	CH_cru_178	5	6	0.00000245824
Capsella rubella	scaffold_6	3	CH_cru_40	10	16	0.0000000000000435352
Capsella rubella	scaffold_7	3	CH_cru_59	7	7	0.0000000000189131
Capsella rubella	scaffold_7	3	CH_cru_323	4	5	0.000299912
Capsella rubella	scaffold_6	6	CH_cru_18	10	16	0.0000000000000435352
Carica papaya	supercontig_37	3	CH_cpa_5	15	22	2.61375e-26
Carica papaya	supercontig_37	6	CH_cpa_4	15	22	2.61375e-26
Citrullus lanatus	Chr11	3	CH_cla_1	23	26	1.04508e-43
Citrullus lanatus	Chr2	3	CH_cla_6	15	16	4.44167e-28
Citrullus lanatus	Chr3	3	CH_cla_47	10	22	0.00000000000187943
Citrullus lanatus	Chr11	6	CH_cla_1	23	26	1.04508e-43
Citrullus lanatus	Chr2	6	CH_cla_6	15	16	4.44167e-28
Citrullus lanatus	Chr3	6	CH_cla_17	10	22	0.00000000000187943
Citrus sinensis	scaffold00170	1	CH_csi_32	5	9	0.000000000741128
Citrus sinensis	scaffold00170	2	CH_csi_82	5	9	0.00000429295
Citrus sinensis	scaffold00170	3	CH_csi_58	6	9	0.0000000384047
Citrus sinensis	scaffold00170	7	CH_csi_3	3	9	0.000386611
Cucumis melo	CM3.5_scaffold00019	3	CH_cme_8	16	20	6.04189e-29
Cucumis melo	CM3.5_scaffold00025	3	CH_cme_77	8	21	0.00000000436998
Cucumis melo	CM3.5_scaffold00045	3	CH_cme_2	20	21	1.65749e-40
Cucumis melo	CM3.5_scaffold00019	6	CH_cme_8	16	20	6.04189e-29
Cucumis melo	CM3.5_scaffold00045	6	CH_cme_3	20	21	1.65749e-40
Eucalyptus grandis	scaffold_1	3	CH_egr_615	4	4	0.0000205788
Eucalyptus grandis	scaffold_1	3	CH_egr_467	6	11	0.000000220334
Eucalyptus grandis	scaffold_5	3	CH_egr_257	8	13	0.0000000000141718
Eucalyptus grandis	scaffold_5	3	CH_egr_799	4	6	0.000306259
Eucalyptus grandis	scaffold_9	3	CH_egr_2	26	29	2.44801e-53
Eucalyptus grandis	scaffold_9	6	CH_egr_4	26	29	2.44801e-53
Fragaria vesca	LG2	3	CH_fve_79	7	12	0.000000000351853
Fragaria vesca	scf0513158	3	CH_fve_210	4	4	0.00000802418
Fragaria vesca	scf0513178	3	CH_fve_13	12	25	1.58676e-18
Fragaria vesca	scf0513178	6	CH_fve_10	12	25	1.58676e-18
Glycine max	Gm04	3	CH_gma_71	8	9	0.00000000000589085
Glycine max	Gm06	3	CH_gma_3	29	33	4.97856e-53
Glycine max	Gm06	3	CH_gma_56	9	11	0.000000000000271866
Glycine max	Gm08	3	CH_gma_138	6	6	0.0000000113138
Glycine max	Gm09	3	CH_gma_1	30	31	2.78063e-58
Glycine max	Gm10	3	CH_gma_55	9	11	0.000000000000271866
Glycine max	Gm12	3	CH_gma_4	24	33	2.22416e-39
Glycine max	Gm12	3	CH_gma_9	19	22	4.27353e-33
Glycine max	Gm13	3	CH_gma_137	6	6	0.0000000113138
Glycine max	Gm06	6	CH_gma_4	34	41	5.11955e-61
Glycine max	Gm09	6	CH_gma_3	33	35	1.96343e-63
Glycine max	Gm10	6	CH_gma_44	10	24	0.0000000000676764
Glycine max	Gm12	6	CH_gma_11	19	22	4.27353e-33
Glycine max	Gm12	6	CH_gma_9	24	33	2.22416e-39
Gossypium raimondii	Chr01	3	CH_gra_4	21	24	5.50658e-39
Gossypium raimondii	Chr05	3	CH_gra_2	25	26	9.44679e-50
Gossypium raimondii	Chr06	3	CH_gra_97	7	8	0.000000000153226
Gossypium raimondii	Chr01	6	CH_gra_7	21	24	5.50658e-39
Gossypium raimondii	Chr05	6	CH_gra_3	25	26	9.44679e-50
Lotus japonicus	chr1	3	CH_lja_192	4	10	0.000420347
Lotus japonicus	chr3	3	CH_lja_68	4	4	0.00000202908
Malus domestica	14	3	CH_mdo_210	4	6	0.0000694714
Manihot esculenta	scaffold02994	3	CH_mes_148	4	4	0.0000319584
Manihot esculenta	scaffold03252	3	CH_mes_1	19	19	8.77806e-39
Manihot esculenta	scaffold06814	3	CH_mes_39	6	6	0.00000000118882
Manihot esculenta	scaffold11069	3	CH_mes_149	4	4	0.0000319584
Manihot esculenta	scaffold03252	6	CH_mes_2	19	19	8.77806e-39
Medicago truncatula	chr1	3	CH_mtr_142	7	8	0.00000000000449348
Medicago truncatula	chr3	3	CH_mtr_347	5	6	0.000000258254
Medicago truncatula	chr3	3	CH_mtr_22	12	12	3.21781e-25
Medicago truncatula	chr4	3	CH_mtr_2	30	38	5.15196e-62
Medicago truncatula	chr8	3	CH_mtr_676	4	6	0.000177088
Medicago truncatula	chr3	6	CH_mtr_27	12	12	3.21781e-25
Medicago truncatula	chr4	6	CH_mtr_1	57	87	2.06426e-114
Medicago truncatula	chr7	9	CH_mtr_27	3	3	0.000416367
Oryza sativa ssp. japonica	3	1	CH_osa_171	4	6	0.000000928987
Oryza sativa ssp. japonica	9	1	CH_osa_21	9	16	5.32633e-19
Oryza sativa ssp. japonica	3	2	CH_osa_216	4	6	0.0000140887
Oryza sativa ssp. japonica	9	2	CH_osa_5	13	17	7.48743e-28
Oryza sativa ssp. japonica	11	3	CH_osa_237	7	52	0.00000605703
Oryza sativa ssp. japonica	9	5	CH_osa_5	13	17	7.48743e-28
Populus trichocarpa	Chr04	3	CH_ptr_11	19	21	1.7801e-37
Populus trichocarpa	Chr09	3	CH_ptr_18	16	19	7.2437e-30
Populus trichocarpa	Chr04	6	CH_ptr_12	19	21	1.7801e-37
Populus trichocarpa	Chr09	6	CH_ptr_15	16	19	7.2437e-30
Prunus persica	scaffold_8	3	CH_ppe_120	6	6	0.00000000079565
Prunus persica	scaffold_8	3	CH_ppe_2	30	38	2.11899e-57
Prunus persica	scaffold_8	6	CH_ppe_2	34	46	6.75391e-64
Solanum lycopersicum	ch01	1	CH_sly_9	21	45	6.27832e-33
Solanum lycopersicum	ch03	1	CH_sly_204	5	7	0.00000172575
Solanum lycopersicum	ch01	2	CH_sly_10	21	45	2.03174e-30
Solanum lycopersicum	ch03	2	CH_sly_241	5	7	0.00000646757
Solanum lycopersicum	ch10	2	CH_sly_216	5	6	0.00000185734
Solanum lycopersicum	ch01	3	CH_sly_2	30	46	3.10643e-49
Solanum lycopersicum	ch03	3	CH_sly_438	4	4	0.0000929622
Solanum lycopersicum	ch03	3	CH_sly_189	6	7	0.0000000326109
Solanum lycopersicum	ch01	4	CH_sly_9	21	45	6.27832e-33
Solanum lycopersicum	ch01	5	CH_sly_10	21	45	2.03174e-30
Solanum lycopersicum	ch01	6	CH_sly_3	30	46	3.10643e-49
Solanum tuberosum	chr01	3	CH_stu_2	30	34	4.22787e-59
Solanum tuberosum	chr03	3	CH_stu_408	5	6	0.00000156334
Solanum tuberosum	chr03	3	CH_stu_204	7	8	0.000000000071332
Solanum tuberosum	chr10	3	CH_stu_533	4	4	0.0000444339
Solanum tuberosum	chr01	6	CH_stu_1	35	42	8.36299e-68
Thellungiella parvula	ch4-1	3	CH_tpa_128	4	4	0.0000376331
Thellungiella parvula	ch6-6	3	CH_tpa_80	5	5	0.000000230309
Thellungiella parvula	ch7-5	3	CH_tpa_35	6	6	0.00000000140036
Theobroma cacao	scaffold_2	3	CH_tca_1	29	36	1.59381e-57
Theobroma cacao	scaffold_5	3	CH_tca_54	9	15	0.000000000000195751
Theobroma cacao	scaffold_2	6	CH_tca_2	29	36	1.59381e-57
Theobroma cacao	scaffold_5	6	CH_tca_39	10	37	0.000000000057801
Vitis vinifera	chr3	3	CH_vvi_15	15	16	9.79257e-31
Vitis vinifera	chr4	3	CH_vvi_31	11	12	2.85025e-21
Vitis vinifera	chr9	3	CH_vvi_411	4	7	0.000351053
Vitis vinifera	chr3	6	CH_vvi_17	15	16	9.79257e-31
Vitis vinifera	chr4	6	CH_vvi_28	11	12	2.85025e-21
Zea mays	1	3	CH_zma_71	5	5	0.0000000503955

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V