PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004867
Description: serine-type endopeptidase inhibitor activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	2	CH_aly_72	4	4	0.00000000668665
Beta vulgaris	Bvchr5.sca024	1	CH_bvu_4	8	9	1.42905e-21
Beta vulgaris	Bvchr5.sca024	2	CH_bvu_4	8	9	9.71626e-21
Beta vulgaris	Bvchr5.sca024	3	CH_bvu_7	8	9	9.71626e-21
Capsella rubella	scaffold_2	2	CH_cru_119	4	5	0.000000136464
Capsella rubella	scaffold_4	2	CH_cru_283	3	5	0.000285839
Capsella rubella	scaffold_8	2	CH_cru_56	5	5	0.0000000000250193
Capsella rubella	scaffold_2	3	CH_cru_140	4	5	0.000000136464
Capsella rubella	scaffold_4	3	CH_cru_321	3	5	0.000285839
Capsella rubella	scaffold_8	3	CH_cru_62	5	5	0.0000000000250193
Citrullus lanatus	Chr10	1	CH_cla_65	4	8	0.0000000640221
Citrullus lanatus	Chr10	2	CH_cla_74	4	8	0.0000000924638
Citrullus lanatus	Chr5	2	CH_cla_71	4	7	0.000000046248
Citrullus lanatus	Chr10	3	CH_cla_54	5	8	0.0000000000440909
Citrullus lanatus	Chr5	3	CH_cla_96	4	7	0.0000000647406
Cucumis melo	CM3.5_scaffold00006	2	CH_cme_19	6	10	0.00000000000000260683
Cucumis melo	CM3.5_scaffold00006	3	CH_cme_32	6	10	0.0000000000000212931
Cucumis melo	CM3.5_scaffold00031	3	CH_cme_71	4	4	0.000000000962163
Fragaria vesca	LG1	1	CH_fve_20	5	11	0.000000000000267222
Fragaria vesca	LG1	2	CH_fve_31	5	11	0.00000000000249332
Fragaria vesca	LG1	3	CH_fve_46	5	11	0.00000000000249332
Glycine max	Gm09	1	CH_gma_181	3	3	0.00000472315
Glycine max	Gm18	1	CH_gma_209	3	4	0.0000188865
Glycine max	Gm09	2	CH_gma_224	3	3	0.00000600661
Glycine max	Gm18	2	CH_gma_268	3	4	0.000024018
Glycine max	Gm20	2	CH_gma_225	3	3	0.00000600661
Glycine max	Gm18	3	CH_gma_327	3	4	0.000024018
Glycine max	Gm20	3	CH_gma_283	3	3	0.00000600661
Gossypium raimondii	Chr07	2	CH_gra_76	4	4	0.000000000327181
Gossypium raimondii	Chr09	2	CH_gra_145	3	3	0.00000122467
Gossypium raimondii	Chr07	3	CH_gra_102	4	4	0.000000000327181
Gossypium raimondii	Chr09	3	CH_gra_172	3	3	0.00000122467
Lotus japonicus	chr5	1	CH_lja_16	3	3	0.00000000677941
Lotus japonicus	chr5	2	CH_lja_21	3	3	0.00000000677941
Lotus japonicus	chr5	3	CH_lja_29	3	3	0.00000000677941
Malus domestica	13	1	CH_mdo_17	4	8	0.000000000722662
Malus domestica	13	2	CH_mdo_23	4	8	0.00000000144522
Malus domestica	13	3	CH_mdo_38	4	8	0.00000000144522
Manihot esculenta	scaffold11998	1	CH_mes_21	4	4	0.0000000000384811
Manihot esculenta	scaffold11998	2	CH_mes_22	4	4	0.0000000000897891
Manihot esculenta	scaffold11998	3	CH_mes_30	4	4	0.0000000000897891
Medicago truncatula	chr7	1	CH_mtr_2	15	22	3.33402e-43
Medicago truncatula	chr1	2	CH_mtr_610	3	8	0.000320461
Medicago truncatula	chr3	2	CH_mtr_347	4	13	0.0000016923
Medicago truncatula	chr7	2	CH_mtr_3	15	22	1.38096e-42
Medicago truncatula	chr1	3	CH_mtr_763	3	8	0.000320461
Medicago truncatula	chr3	3	CH_mtr_419	4	13	0.0000016923
Medicago truncatula	chr7	3	CH_mtr_5	15	22	1.38096e-42
Medicago truncatula	chr7	4	CH_mtr_3	15	22	3.33402e-43
Medicago truncatula	chr7	5	CH_mtr_4	15	22	1.38096e-42
Medicago truncatula	chr7	6	CH_mtr_5	15	22	1.38096e-42
Oryza sativa ssp. japonica	1	1	CH_osa_35	7	9	9.00811e-16
Oryza sativa ssp. japonica	7	1	CH_osa_28	11	66	1.0279e-17
Oryza sativa ssp. japonica	1	2	CH_osa_33	7	9	9.00811e-16
Oryza sativa ssp. japonica	12	2	CH_osa_323	3	4	0.000178835
Oryza sativa ssp. japonica	2	2	CH_osa_80	5	6	0.0000000002092
Oryza sativa ssp. japonica	7	2	CH_osa_27	11	66	1.0279e-17
Oryza sativa ssp. japonica	1	3	CH_osa_43	7	9	0.00000000000000175686
Oryza sativa ssp. japonica	12	3	CH_osa_414	3	4	0.00023554
Oryza sativa ssp. japonica	2	3	CH_osa_97	5	6	0.000000000334012
Oryza sativa ssp. japonica	1	4	CH_osa_35	10	70	0.00000000000000606958
Oryza sativa ssp. japonica	7	4	CH_osa_25	11	66	1.0279e-17
Oryza sativa ssp. japonica	1	5	CH_osa_36	10	70	0.00000000000000606958
Oryza sativa ssp. japonica	7	5	CH_osa_23	11	66	1.0279e-17
Oryza sativa ssp. japonica	1	6	CH_osa_46	10	70	0.0000000000000182087
Oryza sativa ssp. japonica	7	6	CH_osa_26	12	67	1.4322e-19
Populus trichocarpa	Chr10	2	CH_ptr_38	7	7	4.04567e-18
Populus trichocarpa	Chr16	2	CH_ptr_150	4	4	0.0000000133265
Populus trichocarpa	Chr10	3	CH_ptr_46	7	7	4.04567e-18
Populus trichocarpa	Chr16	3	CH_ptr_194	4	4	0.0000000133265
Prunus persica	scaffold_1	2	CH_ppe_56	6	10	0.000000000000355921
Prunus persica	scaffold_5	2	CH_ppe_91	5	8	0.000000000175604
Prunus persica	scaffold_1	3	CH_ppe_73	6	10	0.000000000000355921
Prunus persica	scaffold_5	3	CH_ppe_107	5	8	0.000000000175604
Ricinus communis	29883	2	CH_rco_114	3	3	0.0000031823
Ricinus communis	29883	3	CH_rco_150	3	3	0.0000031823
Solanum lycopersicum	ch03	1	CH_sly_56	7	8	0.0000000000000242164
Solanum lycopersicum	ch11	1	CH_sly_305	4	10	0.000101935
Solanum lycopersicum	ch03	2	CH_sly_60	7	8	0.0000000000000242164
Solanum lycopersicum	ch09	2	CH_sly_5	14	14	1.20366e-34
Solanum lycopersicum	ch11	2	CH_sly_335	4	10	0.000101935
Solanum lycopersicum	ch03	3	CH_sly_76	7	8	0.0000000000000242164
Solanum lycopersicum	ch09	3	CH_sly_6	14	14	1.20366e-34
Solanum lycopersicum	ch11	3	CH_sly_445	4	10	0.000101935
Solanum lycopersicum	ch09	5	CH_sly_6	14	14	1.20366e-34
Solanum lycopersicum	ch09	6	CH_sly_7	14	14	1.20366e-34
Solanum tuberosum	chr09	2	CH_stu_49	8	8	3.28027e-19
Solanum tuberosum	chr10	2	CH_stu_237	4	4	0.000000127499
Solanum tuberosum	chr09	3	CH_stu_71	8	8	3.28027e-19
Theobroma cacao	scaffold_10r	1	CH_tca_16	7	10	1.62739e-18
Theobroma cacao	scaffold_10r	2	CH_tca_17	7	10	6.1016e-18
Theobroma cacao	scaffold_10r	3	CH_tca_26	7	10	6.1016e-18
Vitis vinifera	chr5	1	CH_vvi_83	4	5	0.000000000223352
Vitis vinifera	chr5	2	CH_vvi_96	4	5	0.00000000133999
Vitis vinifera	chr5	3	CH_vvi_123	4	5	0.00000000133999
Zea mays	10	1	CH_zma_47	5	8	0.0000000173253
Zea mays	1	2	CH_zma_56	5	10	0.0000000844697
Zea mays	1	2	CH_zma_66	4	4	0.000000227324
Zea mays	10	2	CH_zma_46	5	8	0.0000000188177
Zea mays	4	2	CH_zma_229	3	4	0.000601953
Zea mays	4	2	CH_zma_79	4	5	0.00000113524
Zea mays	5	2	CH_zma_15	8	14	0.00000000000000296028
Zea mays	6	2	CH_zma_78	4	5	0.00000113524
Zea mays	UNKNOWN	2	CH_zma_117	4	8	0.0000158357
Zea mays	1	3	CH_zma_88	4	4	0.000000227324
Zea mays	1	3	CH_zma_79	5	10	0.0000000844697
Zea mays	10	3	CH_zma_64	5	8	0.0000000188177
Zea mays	4	3	CH_zma_108	4	5	0.00000113524
Zea mays	4	3	CH_zma_317	3	4	0.000601953
Zea mays	5	3	CH_zma_16	8	14	0.00000000000000296028
Zea mays	6	3	CH_zma_107	4	5	0.00000113524
Zea mays	UNKNOWN	3	CH_zma_167	4	8	0.0000158357

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V