PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00003	1	CH_atr_126	4	7	0.0000151094
Eucalyptus grandis	scaffold_5	6	CH_egr_132	10	31	0.000000000000488769
Lotus japonicus	chr4	1	CH_lja_23	7	52	0.000000161678
Medicago truncatula	chr7	1	CH_mtr_259	6	12	0.000000350632
Prunus persica	scaffold_6	3	CH_ppe_315	4	4	0.0000310707
Solanum tuberosum	chr12	4	CH_stu_129	12	165	0.0000267564
Solanum tuberosum	chr12	5	CH_stu_142	12	165	0.0000534688
Theobroma cacao	scaffold_9	6	CH_tca_58	10	68	0.0000000485742
Zea mays	5	4	CH_zma_22	11	166	0.00000421156
Zea mays	5	5	CH_zma_24	11	166	0.00000902888
Zea mays	5	6	CH_zma_35	11	166	0.0000460509

GO term	Description	Number of clusters
GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	1
GO:0004864	protein phosphatase inhibitor activity	17
GO:0004866	endopeptidase inhibitor activity	129
GO:0004867	serine-type endopeptidase inhibitor activity	112
GO:0004869	cysteine-type endopeptidase inhibitor activity	70
GO:0008191	metalloendopeptidase inhibitor activity	4
GO:0008428	ribonuclease inhibitor activity	6
GO:0010521	telomerase inhibitor activity	2
GO:0015066	alpha-amylase inhibitor activity	11
GO:0030414	peptidase inhibitor activity	6
GO:0046910	pectinesterase inhibitor activity	20
GO:0090353	polygalacturonase inhibitor activity	19

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V