PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	5	CH_aly_44	10	80	0.000012672
Arabidopsis lyrata	scaffold_7	6	CH_aly_25	10	33	0.00000000267957
Arabidopsis thaliana	1	1	CH_ath_195	5	6	0.0000140315
Arabidopsis thaliana	1	2	CH_ath_233	5	6	0.0000154266
Medicago truncatula	chr2	1	CH_mtr_349	4	6	0.0000125551
Solanum lycopersicum	ch08	1	CH_sly_389	4	5	0.000440437
Solanum lycopersicum	ch08	2	CH_sly_492	4	5	0.000930796
Solanum tuberosum	chr06	1	CH_stu_235	6	14	0.000000309618
Solanum tuberosum	chr12	1	CH_stu_300	4	4	0.000007548
Solanum tuberosum	chr12	1	CH_stu_438	4	7	0.000261782
Solanum tuberosum	chr06	2	CH_stu_322	6	14	0.00000554312
Solanum tuberosum	chr12	2	CH_stu_384	4	4	0.0000516198
Solanum tuberosum	chr06	3	CH_stu_475	6	14	0.0000120053
Solanum tuberosum	chr12	3	CH_stu_578	4	4	0.0000865537
Thellungiella parvula	ch7-1	2	CH_tpa_137	5	10	0.000143047

GO term	Description	Number of clusters
GO:0034450	ubiquitin-ubiquitin ligase activity	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V