PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004713
Description: protein tyrosine kinase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	1	CH_aly_185	3	5	0.00019565
Arabidopsis lyrata	scaffold_1	2	CH_aly_268	3	5	0.000268413
Arabidopsis lyrata	scaffold_1	3	CH_aly_312	3	5	0.000325767
Capsella rubella	scaffold_1	1	CH_cru_132	4	11	0.0000137682
Capsella rubella	scaffold_1	2	CH_cru_185	4	11	0.0000202798
Capsella rubella	scaffold_1	3	CH_cru_220	4	11	0.0000202798
Carica papaya	supercontig_9	3	CH_cpa_221	4	5	0.0000978573
Chlamydomonas reinhardtii	chromosome_14	1	CH_cre_57	3	3	0.000352232
Chlamydomonas reinhardtii	chromosome_14	2	CH_cre_62	3	3	0.000352232
Chlamydomonas reinhardtii	chromosome_14	3	CH_cre_95	3	3	0.000474205
Citrus sinensis	scaffold00054	1	CH_csi_104	3	3	0.0000997984
Citrus sinensis	scaffold00054	2	CH_csi_142	3	3	0.000120402
Citrus sinensis	scaffold00054	3	CH_csi_177	3	3	0.000120402
Eucalyptus grandis	scaffold_1	1	CH_egr_7	19	23	2.41602e-37
Eucalyptus grandis	scaffold_11	1	CH_egr_206	9	29	0.000000000188998
Eucalyptus grandis	scaffold_3	1	CH_egr_173	8	14	0.0000000000140216
Eucalyptus grandis	scaffold_6	1	CH_egr_131	8	9	0.000000000000042835
Eucalyptus grandis	scaffold_6	1	CH_egr_257	7	15	0.00000000694402
Eucalyptus grandis	scaffold_8	1	CH_egr_332	5	6	0.00000035325
Eucalyptus grandis	scaffold_1	2	CH_egr_11	19	23	4.0529e-37
Eucalyptus grandis	scaffold_11	2	CH_egr_274	9	29	0.00000000023902
Eucalyptus grandis	scaffold_3	2	CH_egr_226	8	14	0.0000000000172855
Eucalyptus grandis	scaffold_6	2	CH_egr_172	8	9	0.0000000000000528335
Eucalyptus grandis	scaffold_6	2	CH_egr_342	7	15	0.00000000833204
Eucalyptus grandis	scaffold_8	2	CH_egr_430	5	6	0.000000402207
Eucalyptus grandis	scaffold_1	3	CH_egr_12	19	23	4.0529e-37
Eucalyptus grandis	scaffold_11	3	CH_egr_319	9	29	0.00000000023902
Eucalyptus grandis	scaffold_3	3	CH_egr_261	8	14	0.0000000000172855
Eucalyptus grandis	scaffold_6	3	CH_egr_399	7	15	0.00000000833204
Eucalyptus grandis	scaffold_8	3	CH_egr_491	5	6	0.000000402207
Eucalyptus grandis	scaffold_1	4	CH_egr_9	19	23	2.41602e-37
Eucalyptus grandis	scaffold_11	4	CH_egr_198	13	265	0.00000900123
Eucalyptus grandis	scaffold_6	4	CH_egr_136	16	275	0.00000000523193
Eucalyptus grandis	scaffold_1	5	CH_egr_13	19	23	4.0529e-37
Eucalyptus grandis	scaffold_11	5	CH_egr_228	13	265	0.0000123896
Eucalyptus grandis	scaffold_6	5	CH_egr_155	16	275	0.00000000782708
Eucalyptus grandis	scaffold_1	6	CH_egr_17	19	23	4.0529e-37
Eucalyptus grandis	scaffold_11	6	CH_egr_254	13	265	0.0000123896
Fragaria vesca	LG5	1	CH_fve_39	5	5	0.0000000000928253
Fragaria vesca	LG5	1	CH_fve_88	5	12	0.0000000730157
Fragaria vesca	LG5	2	CH_fve_104	5	12	0.0000000823623
Fragaria vesca	LG5	2	CH_fve_48	5	5	0.000000000104726
Fragaria vesca	LG5	3	CH_fve_139	5	12	0.0000000926414
Fragaria vesca	LG5	3	CH_fve_74	5	5	0.000000000117817
Glycine max	Gm16	1	CH_gma_77	6	14	0.00000000175136
Glycine max	Gm18	1	CH_gma_127	5	11	0.000000187193
Glycine max	Gm18	1	CH_gma_24	11	47	5.04395e-17
Glycine max	Gm16	2	CH_gma_101	6	14	0.0000000021807
Glycine max	Gm18	2	CH_gma_23	11	47	7.63054e-17
Glycine max	Gm18	2	CH_gma_152	5	11	0.000000224472
Glycine max	Gm16	3	CH_gma_124	6	14	0.00000000251297
Glycine max	Gm18	3	CH_gma_188	5	11	0.00000025246
Glycine max	Gm18	3	CH_gma_26	13	80	3.47306e-18
Glycine max	Gm18	4	CH_gma_18	11	47	5.04395e-17
Glycine max	Gm18	5	CH_gma_16	16	228	2.35797e-17
Glycine max	Gm18	6	CH_gma_19	13	80	3.47306e-18
Gossypium raimondii	Chr06	1	CH_gra_15	13	39	3.3529e-23
Gossypium raimondii	Chr10	1	CH_gra_212	4	13	0.000157797
Gossypium raimondii	Chr11	1	CH_gra_43	8	19	0.0000000000000747092
Gossypium raimondii	Chr06	2	CH_gra_14	13	39	8.50283e-23
Gossypium raimondii	Chr10	2	CH_gra_272	4	13	0.000205447
Gossypium raimondii	Chr11	2	CH_gra_45	8	19	0.000000000000129105
Gossypium raimondii	Chr10	3	CH_gra_328	4	13	0.000205447
Gossypium raimondii	Chr11	3	CH_gra_66	8	19	0.000000000000129105
Gossypium raimondii	Chr06	4	CH_gra_17	13	39	3.3529e-23
Gossypium raimondii	Chr06	5	CH_gra_14	13	39	8.50283e-23
Lotus japonicus	chr5	1	CH_lja_61	4	20	0.0000104472
Lotus japonicus	chr5	2	CH_lja_78	4	20	0.0000134264
Lotus japonicus	chr5	3	CH_lja_98	4	20	0.0000134264
Malus domestica	8	1	CH_mdo_221	3	4	0.000532054
Malus domestica	9	1	CH_mdo_52	4	4	0.000000187472
Malus domestica	8	2	CH_mdo_270	3	4	0.000584341
Malus domestica	9	2	CH_mdo_62	4	4	0.000000212653
Malus domestica	8	3	CH_mdo_367	3	4	0.000584341
Malus domestica	9	3	CH_mdo_89	4	4	0.000000212653
Medicago truncatula	chr1	1	CH_mtr_212	5	11	0.0000000526913
Medicago truncatula	chr1	1	CH_mtr_238	5	13	0.000000146516
Medicago truncatula	chr7	1	CH_mtr_137	7	30	0.000000000259746
Medicago truncatula	chr7	1	CH_mtr_340	4	8	0.00000734417
Medicago truncatula	chr8	1	CH_mtr_288	4	6	0.00000157654
Medicago truncatula	chr1	2	CH_mtr_245	5	11	0.0000000603095
Medicago truncatula	chr1	2	CH_mtr_276	5	13	0.000000167691
Medicago truncatula	chr7	2	CH_mtr_388	4	8	0.00000817615
Medicago truncatula	chr7	2	CH_mtr_162	7	30	0.000000000314512
Medicago truncatula	chr8	2	CH_mtr_351	4	6	0.00000175523
Medicago truncatula	chr1	3	CH_mtr_309	5	11	0.0000000603095
Medicago truncatula	chr1	3	CH_mtr_332	5	13	0.000000167691
Medicago truncatula	chr7	3	CH_mtr_475	4	8	0.00000817615
Medicago truncatula	chr8	3	CH_mtr_422	4	6	0.00000175523
Medicago truncatula	chr1	4	CH_mtr_65	10	100	0.00000000000230071
Medicago truncatula	chr1	5	CH_mtr_67	10	100	0.00000000000302409
Medicago truncatula	chr1	6	CH_mtr_86	10	100	0.00000000000302409
Oryza sativa ssp. japonica	10	1	CH_osa_117	7	26	0.0000000114993
Oryza sativa ssp. japonica	10	2	CH_osa_118	7	26	0.0000000128103
Oryza sativa ssp. japonica	10	3	CH_osa_131	7	26	0.00000001666
Oryza sativa ssp. japonica	10	4	CH_osa_57	12	189	0.00000000189613
Oryza sativa ssp. japonica	10	5	CH_osa_62	12	189	0.00000000227924
Oryza sativa ssp. japonica	10	6	CH_osa_74	12	189	0.00000000356507
Populus trichocarpa	Chr02	1	CH_ptr_221	4	6	0.0000092197
Populus trichocarpa	Chr13	1	CH_ptr_277	4	10	0.000128273
Populus trichocarpa	Chr15	1	CH_ptr_85	7	16	0.0000000000471137
Populus trichocarpa	Chr19	1	CH_ptr_125	6	13	0.00000000379634
Populus trichocarpa	Chr19	1	CH_ptr_205	7	70	0.00000451887
Populus trichocarpa	scaffold_39	1	CH_ptr_222	4	6	0.0000092197
Populus trichocarpa	Chr02	2	CH_ptr_254	4	6	0.000012332
Populus trichocarpa	Chr13	2	CH_ptr_358	4	10	0.000171491
Populus trichocarpa	Chr15	2	CH_ptr_108	7	16	0.00000000007908
Populus trichocarpa	Chr19	2	CH_ptr_142	6	13	0.00000000590177
Populus trichocarpa	Chr19	2	CH_ptr_243	7	70	0.00000753149
Populus trichocarpa	scaffold_39	2	CH_ptr_255	4	6	0.000012332
Populus trichocarpa	Chr02	3	CH_ptr_335	4	6	0.000012332
Populus trichocarpa	Chr13	3	CH_ptr_450	4	10	0.000171491
Populus trichocarpa	Chr15	3	CH_ptr_129	7	16	0.00000000007908
Populus trichocarpa	Chr19	3	CH_ptr_318	7	70	0.00000753149
Populus trichocarpa	Chr19	3	CH_ptr_183	6	13	0.00000000590177
Populus trichocarpa	scaffold_39	3	CH_ptr_336	4	6	0.000012332
Prunus persica	scaffold_1	1	CH_ppe_146	7	51	0.000000212005
Prunus persica	scaffold_8	1	CH_ppe_31	8	10	1.48828e-16
Prunus persica	scaffold_1	2	CH_ppe_170	7	51	0.000000276854
Prunus persica	scaffold_8	2	CH_ppe_36	8	10	2.03161e-16
Prunus persica	scaffold_1	3	CH_ppe_210	7	51	0.000000357938
Prunus persica	scaffold_8	3	CH_ppe_43	8	10	2.74107e-16
Prunus persica	scaffold_8	4	CH_ppe_65	10	196	0.000000123687
Prunus persica	scaffold_8	5	CH_ppe_71	10	196	0.000000181801
Prunus persica	scaffold_8	6	CH_ppe_91	10	196	0.00000026318
Solanum lycopersicum	ch04	1	CH_sly_194	4	6	0.000000859237
Solanum lycopersicum	ch04	2	CH_sly_208	4	6	0.00000115164
Solanum lycopersicum	ch04	3	CH_sly_278	4	6	0.0000019532
Solanum lycopersicum	ch11	3	CH_sly_62	7	7	2.80689e-16
Solanum tuberosum	chr04	1	CH_stu_66	8	12	3.66449e-16
Solanum tuberosum	chr04	1	CH_stu_91	7	11	0.000000000000178762
Solanum tuberosum	chr04	2	CH_stu_68	8	12	4.97223e-16
Solanum tuberosum	chr04	2	CH_stu_96	7	11	0.000000000000232854
Solanum tuberosum	chr04	3	CH_stu_142	7	11	0.000000000000486994
Solanum tuberosum	chr04	3	CH_stu_102	8	12	0.00000000000000116467
Solanum tuberosum	chr11	3	CH_stu_104	7	7	0.00000000000000148417
Solanum tuberosum	chr04	4	CH_stu_39	15	116	8.81592e-21
Solanum tuberosum	chr04	5	CH_stu_39	15	116	1.62536e-20
Solanum tuberosum	chr04	6	CH_stu_61	15	116	8.85467e-20
Theobroma cacao	scaffold_1	1	CH_tca_152	4	6	0.00000117041
Theobroma cacao	scaffold_10r	1	CH_tca_153	4	6	0.00000117041
Theobroma cacao	scaffold_1	2	CH_tca_164	4	6	0.00000159247
Theobroma cacao	scaffold_10r	2	CH_tca_165	4	6	0.00000159247
Theobroma cacao	scaffold_1	3	CH_tca_210	4	6	0.00000159247
Theobroma cacao	scaffold_10r	3	CH_tca_211	4	6	0.00000159247
Vitis vinifera	chr10	1	CH_vvi_143	5	11	0.000000459709
Vitis vinifera	chr11	1	CH_vvi_81	6	9	0.000000000164283
Vitis vinifera	chr12	1	CH_vvi_142	6	26	0.000000437571
Vitis vinifera	chr12_random	1	CH_vvi_263	3	3	0.000248279
Vitis vinifera	chr10	2	CH_vvi_160	5	11	0.000000502983
Vitis vinifera	chr11	2	CH_vvi_88	6	9	0.000000000183221
Vitis vinifera	chr12	2	CH_vvi_159	6	26	0.000000487745
Vitis vinifera	chr12_random	2	CH_vvi_310	3	3	0.000261821
Vitis vinifera	chr10	3	CH_vvi_206	5	11	0.000000709792
Vitis vinifera	chr11	3	CH_vvi_115	6	9	0.000000000278171
Vitis vinifera	chr12_random	3	CH_vvi_407	3	3	0.000320913
Vitis vinifera	chr5	3	CH_vvi_408	3	3	0.000320913

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V