PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_10	2	CH_cpa_199	2	4	0.000582439
Citrullus lanatus	Chr11	2	CH_cla_149	2	2	0.0000851136
Citrullus lanatus	Chr11	3	CH_cla_193	2	2	0.0000851136
Malus domestica	2	2	CH_mdo_240	2	3	0.00041541
Malus domestica	2	3	CH_mdo_324	2	3	0.00041541
Medicago truncatula	chr5	3	CH_mtr_748	2	2	0.000306786
Oryza sativa ssp. japonica	6	2	CH_osa_359	2	3	0.000321127
Oryza sativa ssp. japonica	6	3	CH_osa_421	2	3	0.000321127
Solanum tuberosum	chr02	3	CH_stu_769	2	2	0.000853971
Vitis vinifera	chr9	2	CH_vvi_84	4	6	0.0000000000957215
Vitis vinifera	chr9	3	CH_vvi_111	4	6	0.0000000000957215
Zea mays	5	2	CH_zma_247	2	3	0.000905197
Zea mays	5	3	CH_zma_333	2	3	0.000905197

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V