PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00025	1	CH_csi_83	3	3	0.0000091549
Citrus sinensis	scaffold00025	2	CH_csi_105	3	3	0.0000407242
Citrus sinensis	scaffold00025	3	CH_csi_136	3	3	0.0000462775
Citrus sinensis	scaffold00141	3	CH_csi_225	3	5	0.000461837
Glycine max	Gm10	1	CH_gma_226	3	3	0.0000291398
Glycine max	Gm13	1	CH_gma_225	3	3	0.0000291398
Lotus japonicus	chr2	3	CH_lja_8	6	10	0.000000000000483301

GO term	Description	Number of clusters
GO:0004310	farnesyl-diphosphate farnesyltransferase activity	21
GO:0004311	farnesyltranstransferase activity	5
GO:0004663	Rab geranylgeranyltransferase activity	9
GO:0008318	protein prenyltransferase activity	3
GO:0008495	protoheme IX farnesyltransferase activity	1
GO:0010176	homogentisate phytyltransferase activity	4
GO:0016767	geranylgeranyl-diphosphate geranylgeranyltransferase activity	2
GO:0045547	dehydrodolichyl diphosphate synthase activity	3
GO:0047293	4-hydroxybenzoate nonaprenyltransferase activity	4
GO:0050267	rubber cis-polyprenylcistransferase activity	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V