PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr3	2	CH_cla_100	3	3	0.00000310795
Citrullus lanatus	Chr3	3	CH_cla_131	3	3	0.00000310795
Citrus sinensis	scaffold00013	2	CH_csi_83	3	3	0.00000442654
Citrus sinensis	scaffold00013	3	CH_csi_105	3	3	0.00000442654
Cucumis melo	CM3.5_scaffold00025	2	CH_cme_64	4	5	0.0000000160066
Cucumis melo	CM3.5_scaffold00025	3	CH_cme_92	4	5	0.0000000160066
Eucalyptus grandis	scaffold_3	2	CH_egr_501	3	3	0.00000417845
Eucalyptus grandis	scaffold_3	3	CH_egr_572	3	3	0.00000417845
Manihot esculenta	scaffold09570	2	CH_mes_63	4	14	0.000000537791
Manihot esculenta	scaffold09570	3	CH_mes_96	4	14	0.000000844779
Prunus persica	scaffold_2	1	CH_ppe_275	2	3	0.000216247

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V