PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr9.sca025	1	CH_bvu_66	3	3	0.0000000559485
Beta vulgaris	Bvchr9.sca025	2	CH_bvu_77	3	3	0.0000000559485
Beta vulgaris	Bvchr9.sca025	3	CH_bvu_110	3	3	0.000000139871
Cucumis melo	CM3.5_scaffold00016	3	CH_cme_344	2	2	0.000765462
Cucumis melo	CM3.5_scaffold00035	3	CH_cme_343	2	2	0.000765462
Cucumis melo	CM3.5_scaffold00016	9	CH_cme_13	2	2	0.000826207
Cucumis melo	CM3.5_scaffold00035	9	CH_cme_12	2	2	0.000826207
Eucalyptus grandis	scaffold_6	1	CH_egr_579	2	2	0.000350559
Eucalyptus grandis	scaffold_6	3	CH_egr_808	2	2	0.000350559
Fragaria vesca	LG3	1	CH_fve_255	2	2	0.000598784
Fragaria vesca	LG3	2	CH_fve_325	2	2	0.000598784
Fragaria vesca	LG3	3	CH_fve_415	2	2	0.000598784
Lotus japonicus	chr1	3	CH_lja_180	2	2	0.000403361
Lotus japonicus	chr1	9	CH_lja_13	2	2	0.000425577
Manihot esculenta	scaffold02080	1	CH_mes_155	2	2	0.000569476
Manihot esculenta	scaffold02080	2	CH_mes_210	2	2	0.000569476
Solanum tuberosum	chr04	3	CH_stu_346	3	3	0.000000170167
Thellungiella parvula	ch7-4	2	CH_tpa_189	2	2	0.000476815
Thellungiella parvula	ch7-4	3	CH_tpa_225	2	2	0.000476815
Theobroma cacao	scaffold_4	9	CH_tca_10	2	2	0.000448363
Vitis vinifera	chr3	1	CH_vvi_90	4	7	0.00000000156306
Vitis vinifera	chr3	2	CH_vvi_98	4	7	0.00000000156306
Vitis vinifera	chr3	3	CH_vvi_50	6	7	3.18464e-17

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V