PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004386
Description: helicase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_94	3	CH_cpa_133	8	39	0.00000935719
Citrullus lanatus	Chr5	3	CH_cla_171	4	4	0.0000578249
Cucumis melo	CM3.5_scaffold00010	1	CH_cme_113	5	11	0.000046617
Cucumis melo	CM3.5_scaffold00010	2	CH_cme_135	5	11	0.0000501016
Cucumis melo	CM3.5_scaffold00009	3	CH_cme_246	5	9	0.0000908428
Cucumis melo	CM3.5_scaffold00030	3	CH_cme_251	8	49	0.00011179
Cucumis melo	CM3.5_scaffold00042	3	CH_cme_161	5	6	0.00000441019
Eucalyptus grandis	scaffold_11	1	CH_egr_387	5	7	0.00000256105
Eucalyptus grandis	scaffold_2	1	CH_egr_294	6	9	0.0000000515449
Eucalyptus grandis	scaffold_5	1	CH_egr_87	10	12	2.50446e-17
Eucalyptus grandis	scaffold_11	2	CH_egr_486	5	7	0.00000256105
Eucalyptus grandis	scaffold_2	2	CH_egr_371	6	9	0.0000000515449
Eucalyptus grandis	scaffold_5	2	CH_egr_115	10	12	2.50446e-17
Eucalyptus grandis	scaffold_5	4	CH_egr_75	10	12	2.50446e-17
Eucalyptus grandis	scaffold_5	5	CH_egr_78	10	12	2.50446e-17
Medicago truncatula	chr7	1	CH_mtr_520	4	5	0.000466664
Medicago truncatula	chr7	2	CH_mtr_634	4	5	0.000466664
Medicago truncatula	chr7	9	CH_mtr_30	4	5	0.000591355
Populus trichocarpa	Chr16	3	CH_ptr_202	6	6	0.0000000199903
Solanum lycopersicum	ch10	1	CH_sly_98	8	13	0.000000000553596
Solanum lycopersicum	ch10	2	CH_sly_98	8	13	0.000000000553596
Solanum lycopersicum	ch07	3	CH_sly_227	6	7	0.000000276806
Solanum lycopersicum	ch08	3	CH_sly_144	14	75	0.00000000129662
Solanum lycopersicum	ch08	3	CH_sly_81	10	13	0.000000000000114828
Solanum lycopersicum	ch08	6	CH_sly_52	10	13	0.000000000000114828
Solanum lycopersicum	ch08	6	CH_sly_70	14	75	0.00000000129662
Solanum tuberosum	chr05	3	CH_stu_132	9	10	0.000000000000168316
Solanum tuberosum	chr06	3	CH_stu_596	8	41	0.000136007
Solanum tuberosum	chr08	9	CH_stu_4	8	15	0.000000000749469
Vitis vinifera	chr10	3	CH_vvi_201	5	5	0.000000495224
Zea mays	1	3	CH_zma_202	4	4	0.0000558996
Zea mays	10	3	CH_zma_44	8	14	0.000000000213955
Zea mays	1	9	CH_zma_7	4	4	0.0000321313

Available child term results

GO term	Description	Number of clusters
GO:0003678	DNA helicase activity	4
GO:0003724	RNA helicase activity	8
GO:0004003	ATP-dependent DNA helicase activity	4
GO:0004004	ATP-dependent RNA helicase activity	2
GO:0008026	ATP-dependent helicase activity	20
GO:0009378	four-way junction helicase activity	10
GO:0043138	3'-5' DNA helicase activity	4
GO:0043139	5'-3' DNA helicase activity	4
GO:0043141	ATP-dependent 5'-3' DNA helicase activity	14

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V