PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr4	1	CH_cla_184	2	2	0.000510682
Citrullus lanatus	Chr4	2	CH_cla_231	2	2	0.000510682
Citrullus lanatus	Chr4	3	CH_cla_291	2	2	0.000510682
Solanum lycopersicum	ch01	1	CH_sly_406	2	2	0.00057374
Solanum lycopersicum	ch01	2	CH_sly_458	2	2	0.00057374
Solanum lycopersicum	ch01	3	CH_sly_600	2	2	0.00057374
Solanum tuberosum	chr01	1	CH_stu_480	2	2	0.000569314
Solanum tuberosum	chr01	2	CH_stu_556	2	2	0.000569314
Solanum tuberosum	chr01	3	CH_stu_739	2	2	0.000569314

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V