PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004252
Description: serine-type endopeptidase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00017	1	CH_atr_6	20	29	1.19968e-35
Amborella trichopoda	scaffold00040	1	CH_atr_127	4	4	0.0000178983
Amborella trichopoda	scaffold00044	1	CH_atr_70	6	9	0.0000000376865
Amborella trichopoda	scaffold00069	1	CH_atr_13	15	29	4.67075e-23
Amborella trichopoda	scaffold00017	2	CH_atr_5	20	29	1.65861e-35
Amborella trichopoda	scaffold00040	2	CH_atr_131	4	4	0.000019021
Amborella trichopoda	scaffold00044	2	CH_atr_69	6	9	0.0000000413086
Amborella trichopoda	scaffold00069	2	CH_atr_12	15	29	5.92191e-23
Amborella trichopoda	scaffold00017	4	CH_atr_5	20	29	1.19968e-35
Amborella trichopoda	scaffold00069	4	CH_atr_12	15	29	4.67075e-23
Amborella trichopoda	scaffold00017	5	CH_atr_5	20	29	1.65861e-35
Amborella trichopoda	scaffold00069	5	CH_atr_12	15	29	5.92191e-23
Arabidopsis lyrata	scaffold_2	1	CH_aly_139	4	4	0.0000126119
Arabidopsis lyrata	scaffold_2	2	CH_aly_185	4	4	0.0000129722
Arabidopsis lyrata	scaffold_2	3	CH_aly_221	4	4	0.0000174661
Arabidopsis thaliana	1	1	CH_ath_107	5	6	0.0000000903473
Arabidopsis thaliana	4	1	CH_ath_305	6	45	0.000363749
Arabidopsis thaliana	5	1	CH_ath_96	8	40	0.0000000371525
Arabidopsis thaliana	1	2	CH_ath_135	5	6	0.0000000903473
Arabidopsis thaliana	4	2	CH_ath_370	6	45	0.000363749
Arabidopsis thaliana	5	2	CH_ath_124	8	40	0.0000000371525
Arabidopsis thaliana	1	3	CH_ath_148	5	6	0.000000116748
Arabidopsis thaliana	4	3	CH_ath_412	6	45	0.00049257
Arabidopsis thaliana	5	3	CH_ath_94	9	40	0.000000000677761
Beta vulgaris	Bvchr7.sca021	1	CH_bvu_74	5	6	0.0000000937932
Beta vulgaris	Bvchr7.sca021	2	CH_bvu_85	5	6	0.0000000999597
Brassica rapa	A02	1	CH_bra_36	5	5	0.0000000203778
Brassica rapa	A02	2	CH_bra_49	5	5	0.0000000211162
Capsella rubella	scaffold_6	3	CH_cru_36	9	14	0.0000000000000208216
Capsella rubella	scaffold_6	6	CH_cru_23	10	30	0.00000000000118568
Carica papaya	supercontig_18	1	CH_cpa_92	4	5	0.0000653582
Carica papaya	supercontig_81	1	CH_cpa_6	11	14	2.60165e-19
Carica papaya	supercontig_18	2	CH_cpa_109	4	5	0.0000679186
Carica papaya	supercontig_81	2	CH_cpa_5	11	14	2.90251e-19
Carica papaya	supercontig_81	4	CH_cpa_4	11	14	2.60165e-19
Carica papaya	supercontig_81	5	CH_cpa_4	11	14	2.90251e-19
Chlamydomonas reinhardtii	chromosome_5	3	CH_cre_72	6	32	0.000127951
Citrullus lanatus	Chr10	1	CH_cla_23	8	10	0.0000000000000322227
Citrullus lanatus	Chr10	2	CH_cla_28	8	10	0.0000000000000353637
Citrullus lanatus	Chr10	4	CH_cla_29	10	198	0.000095542
Citrullus lanatus	Chr10	5	CH_cla_37	10	198	0.000106704
Citrus sinensis	scaffold00013	1	CH_csi_60	5	6	0.00000051958
Citrus sinensis	scaffold00026	1	CH_csi_31	6	6	0.000000000463533
Citrus sinensis	scaffold00013	2	CH_csi_65	5	6	0.000000547488
Citrus sinensis	scaffold00026	2	CH_csi_33	6	6	0.000000000493764
Cucumis melo	CM3.5_scaffold00021	1	CH_cme_76	6	15	0.000000284687
Cucumis melo	CM3.5_scaffold00063	1	CH_cme_21	10	21	0.00000000000000274611
Cucumis melo	CM3.5_scaffold00021	2	CH_cme_87	6	15	0.000000303164
Cucumis melo	CM3.5_scaffold00063	2	CH_cme_20	10	21	0.00000000000000305699
Cucumis melo	CM3.5_scaffold00042	3	CH_cme_291	4	7	0.000249975
Cucumis melo	CM3.5_scaffold00063	4	CH_cme_11	10	21	0.00000000000000274611
Cucumis melo	CM3.5_scaffold00063	5	CH_cme_9	10	21	0.00000000000000305699
Eucalyptus grandis	scaffold_9	3	CH_egr_737	6	34	0.000154366
Glycine max	Gm04	1	CH_gma_116	5	5	0.0000000721721
Glycine max	Gm04	2	CH_gma_134	5	5	0.0000000787293
Glycine max	Gm09	3	CH_gma_391	4	5	0.000114584
Gossypium raimondii	Chr10	1	CH_gra_105	5	5	0.0000000413214
Gossypium raimondii	Chr10	2	CH_gra_119	5	5	0.0000000426988
Malus domestica	10	1	CH_mdo_151	6	35	0.000104785
Malus domestica	14	1	CH_mdo_83	5	9	0.00000259552
Malus domestica	15	1	CH_mdo_149	4	7	0.0000916053
Malus domestica	7	1	CH_mdo_98	4	4	0.00000614059
Malus domestica	10	2	CH_mdo_172	6	35	0.000109029
Malus domestica	14	2	CH_mdo_97	5	9	0.0000026836
Malus domestica	15	2	CH_mdo_166	4	7	0.0000940777
Malus domestica	2	2	CH_mdo_72	5	7	0.000000449827
Malus domestica	7	2	CH_mdo_113	4	4	0.00000630655
Medicago truncatula	chr5	1	CH_mtr_66	9	19	0.0000000000000250846
Medicago truncatula	chr5	2	CH_mtr_79	9	19	0.0000000000000311038
Medicago truncatula	chr4	4	CH_mtr_177	10	274	0.000210348
Medicago truncatula	chr4	5	CH_mtr_198	10	274	0.000263585
Oryza sativa ssp. japonica	2	1	CH_osa_199	5	14	0.00000608727
Oryza sativa ssp. japonica	2	1	CH_osa_166	6	23	0.000000657992
Oryza sativa ssp. japonica	4	1	CH_osa_168	8	79	0.000000708732
Oryza sativa ssp. japonica	2	2	CH_osa_164	6	23	0.000000690172
Oryza sativa ssp. japonica	2	2	CH_osa_197	5	14	0.00000633387
Oryza sativa ssp. japonica	4	2	CH_osa_166	8	79	0.000000755129
Oryza sativa ssp. japonica	4	3	CH_osa_73	11	79	0.00000000000544354
Oryza sativa ssp. japonica	4	6	CH_osa_59	11	79	0.00000000000544354
Prunus persica	scaffold_5	1	CH_ppe_18	10	10	2.78007e-20
Prunus persica	scaffold_5	2	CH_ppe_26	10	10	3.04234e-20
Prunus persica	scaffold_5	4	CH_ppe_17	10	10	2.78007e-20
Prunus persica	scaffold_5	5	CH_ppe_19	10	10	3.04234e-20
Ricinus communis	30115	1	CH_rco_61	5	5	0.0000000581035
Ricinus communis	30143	1	CH_rco_116	4	4	0.0000120737
Ricinus communis	30170	1	CH_rco_115	4	4	0.0000120737
Ricinus communis	30115	2	CH_rco_70	5	5	0.000000061068
Ricinus communis	30143	2	CH_rco_131	4	4	0.0000125615
Ricinus communis	30170	2	CH_rco_130	4	4	0.0000125615
Ricinus communis	30190	2	CH_rco_14	9	14	0.0000000000000603785
Ricinus communis	30190	4	CH_rco_12	11	35	0.000000000000219123
Ricinus communis	30190	5	CH_rco_11	11	35	0.000000000000245056
Solanum lycopersicum	ch08	1	CH_sly_47	9	11	0.00000000000000108366
Solanum lycopersicum	ch08	1	CH_sly_6	17	18	2.94088e-35
Solanum lycopersicum	ch08	2	CH_sly_4	17	18	3.2979e-35
Solanum lycopersicum	ch08	2	CH_sly_53	9	11	0.0000000000000011495
Solanum lycopersicum	ch03	3	CH_sly_441	4	5	0.0000970562
Solanum lycopersicum	ch08	4	CH_sly_7	17	18	2.94088e-35
Solanum lycopersicum	ch08	5	CH_sly_5	17	18	3.2979e-35
Solanum tuberosum	chr03	1	CH_stu_379	4	5	0.0000948301
Solanum tuberosum	chr04	1	CH_stu_328	4	4	0.000019039
Solanum tuberosum	chr07	1	CH_stu_313	5	9	0.000011225
Solanum tuberosum	chr08	1	CH_stu_34	12	12	4.19433e-24
Solanum tuberosum	chr08	1	CH_stu_31	20	77	7.20818e-25
Solanum tuberosum	chr10	1	CH_stu_327	4	4	0.000019039
Solanum tuberosum	chr10	1	CH_stu_154	6	6	0.000000000427758
Solanum tuberosum	chr03	2	CH_stu_423	4	5	0.0000970858
Solanum tuberosum	chr04	2	CH_stu_355	4	4	0.0000194923
Solanum tuberosum	chr07	2	CH_stu_340	5	9	0.00001156
Solanum tuberosum	chr08	2	CH_stu_29	20	77	8.14397e-25
Solanum tuberosum	chr08	2	CH_stu_33	12	12	4.5089e-24
Solanum tuberosum	chr10	2	CH_stu_165	6	6	0.000000000443219
Solanum tuberosum	chr10	2	CH_stu_354	4	4	0.0000194923
Solanum tuberosum	chr03	3	CH_stu_392	5	6	0.000000945862
Solanum tuberosum	chr08	4	CH_stu_33	12	12	4.19433e-24
Solanum tuberosum	chr08	4	CH_stu_30	20	77	7.20818e-25
Solanum tuberosum	chr08	5	CH_stu_30	20	77	8.14397e-25
Solanum tuberosum	chr08	5	CH_stu_33	12	12	4.5089e-24
Thellungiella parvula	ch6-6	2	CH_tpa_88	7	39	0.00000472232
Theobroma cacao	scaffold_10r	1	CH_tca_29	8	9	0.00000000000000792817
Theobroma cacao	scaffold_10r	2	CH_tca_30	8	9	0.00000000000000854369
Vitis vinifera	chr16	1	CH_vvi_171	6	15	0.00000234134
Vitis vinifera	chr2	1	CH_vvi_199	4	4	0.0000190086
Vitis vinifera	chr6	1	CH_vvi_198	4	4	0.0000190086
Vitis vinifera	chrUn	1	CH_vvi_145	5	6	0.000000576618
Vitis vinifera	chr13	2	CH_vvi_18	13	15	3.72838e-24
Vitis vinifera	chr16	2	CH_vvi_189	6	15	0.00000244547
Vitis vinifera	chr2	2	CH_vvi_226	4	4	0.0000195676
Vitis vinifera	chr6	2	CH_vvi_225	4	4	0.0000195676
Vitis vinifera	chrUn	2	CH_vvi_162	5	6	0.000000597955
Vitis vinifera	chr5	3	CH_vvi_371	4	5	0.000180018
Vitis vinifera	chr13	5	CH_vvi_18	13	15	3.72838e-24

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V