PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004124
Description: cysteine synthase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00004	3	CH_atr_136	3	3	0.000000327962
Beta vulgaris	Bvchr4.sca006	1	CH_bvu_209	2	2	0.000579374
Beta vulgaris	Bvchr4.sca006	2	CH_bvu_283	2	2	0.000579374
Carica papaya	supercontig_117	3	CH_cpa_22	5	5	0.00000000000016794
Citrullus lanatus	Chr3	3	CH_cla_64	4	4	0.000000000233101
Citrus sinensis	scaffold00144	3	CH_csi_4	9	9	1.011e-26
Cucumis melo	CM3.5_scaffold00025	3	CH_cme_154	3	4	0.00000295259
Fragaria vesca	scf0513168	1	CH_fve_77	4	14	0.000000022544
Fragaria vesca	scf0513168	2	CH_fve_94	4	14	0.0000000450773
Fragaria vesca	scf0513168	3	CH_fve_68	5	14	0.0000000000485827
Manihot esculenta	scaffold03802	3	CH_mes_109	3	3	0.00000297292
Medicago truncatula	chr1	1	CH_mtr_115	4	4	0.0000000000285866
Medicago truncatula	chr4	1	CH_mtr_301	3	5	0.00000232895
Medicago truncatula	chr1	2	CH_mtr_130	4	4	0.0000000000285866
Medicago truncatula	chr4	2	CH_mtr_353	3	5	0.00000232895
Medicago truncatula	chr1	3	CH_mtr_176	4	4	0.0000000000619376
Medicago truncatula	chr4	3	CH_mtr_449	3	5	0.00000403666
Oryza sativa ssp. japonica	6	3	CH_osa_62	5	7	0.000000000000511029
Populus trichocarpa	Chr05	1	CH_ptr_75	5	7	0.000000000000767205
Populus trichocarpa	Chr05	2	CH_ptr_82	5	7	0.000000000000767205
Populus trichocarpa	Chr05	3	CH_ptr_59	6	7	2.41509e-16
Populus trichocarpa	Chr13	3	CH_ptr_313	3	4	0.00000676955
Ricinus communis	30128	3	CH_rco_17	6	6	1.89925e-16
Solanum lycopersicum	ch01	3	CH_sly_122	4	4	0.000000000118993
Solanum tuberosum	chr01	1	CH_stu_40	7	7	8.8524e-22
Solanum tuberosum	chr01	2	CH_stu_37	7	7	8.8524e-22
Solanum tuberosum	chr01	3	CH_stu_52	8	8	1.48531e-23
Vitis vinifera	chr14	3	CH_vvi_30	8	12	2.73171e-21
Zea mays	9	3	CH_zma_98	4	18	0.000000576551

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V