PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00016	1	CH_atr_182	2	2	0.000237107
Amborella trichopoda	scaffold00016	2	CH_atr_194	2	2	0.000237107
Amborella trichopoda	scaffold00016	3	CH_atr_283	2	2	0.000237107
Citrullus lanatus	Chr6	1	CH_cla_183	2	2	0.000510682
Citrullus lanatus	Chr6	2	CH_cla_229	2	2	0.000510682
Citrullus lanatus	Chr6	3	CH_cla_289	2	2	0.000510682
Medicago truncatula	chr6	1	CH_mtr_35	7	25	2.49643e-17
Medicago truncatula	chr6	2	CH_mtr_44	7	25	2.49643e-17
Medicago truncatula	chr6	3	CH_mtr_29	9	29	2.22729e-23
Ricinus communis	30174	1	CH_rco_96	3	6	0.0000011569

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V