PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00064	1	CH_atr_80	3	3	0.000000187407
Amborella trichopoda	scaffold00064	2	CH_atr_81	3	3	0.000000187407
Beta vulgaris	Bvchr8.sca014	3	CH_bvu_369	2	2	0.000965624
Carica papaya	supercontig_170	1	CH_cpa_60	3	4	0.00000197897
Carica papaya	supercontig_170	2	CH_cpa_67	3	4	0.00000197897
Citrullus lanatus	Chr7	1	CH_cla_77	3	3	0.000000217339
Citrullus lanatus	Chr7	2	CH_cla_79	3	3	0.000000217339
Malus domestica	17	1	CH_mdo_261	2	2	0.000969328
Populus trichocarpa	Chr04	1	CH_ptr_354	2	2	0.000747031
Populus trichocarpa	Chr04	2	CH_ptr_440	2	2	0.000747031
Prunus persica	scaffold_1	1	CH_ppe_305	2	2	0.00043251
Prunus persica	scaffold_1	2	CH_ppe_384	2	2	0.00043251
Solanum tuberosum	chr11	1	CH_stu_507	2	2	0.000853971
Solanum tuberosum	chr11	2	CH_stu_572	2	2	0.000853971
Zea mays	3	1	CH_zma_196	2	2	0.00030175
Zea mays	3	2	CH_zma_206	2	2	0.00030175
Zea mays	2	3	CH_zma_324	2	2	0.000754375
Zea mays	3	3	CH_zma_323	2	2	0.000754375

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V