PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0003899
Description: DNA-directed RNA polymerase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00068	1	CH_atr_91	4	4	0.000000401026
Amborella trichopoda	scaffold00068	2	CH_atr_93	4	4	0.000000544068
Amborella trichopoda	scaffold00068	3	CH_atr_149	4	4	0.0000010029
Beta vulgaris	0028.scaffold00107	1	CH_bvu_196	3	3	0.000454707
Beta vulgaris	0028.scaffold00107	2	CH_bvu_262	3	3	0.000478639
Carica papaya	supercontig_92	1	CH_cpa_123	3	4	0.000150714
Carica papaya	supercontig_92	2	CH_cpa_158	3	4	0.00017448
Carica papaya	supercontig_92	3	CH_cpa_239	3	4	0.000229252
Citrullus lanatus	Chr3	1	CH_cla_146	3	3	0.000187955
Citrullus lanatus	Chr3	2	CH_cla_173	3	3	0.000254569
Citrullus lanatus	Chr3	3	CH_cla_263	3	3	0.000317967
Eucalyptus grandis	scaffold_5	1	CH_egr_599	3	4	0.000507467
Glycine max	Gm18	1	CH_gma_158	5	12	0.00000134714
Glycine max	Gm18	2	CH_gma_198	5	12	0.0000020083
Glycine max	Gm18	3	CH_gma_256	5	12	0.00000279315
Malus domestica	11	1	CH_mdo_227	3	4	0.000584341
Malus domestica	11	2	CH_mdo_273	3	4	0.00066902
Manihot esculenta	scaffold05875	2	CH_mes_160	4	11	0.000264107
Manihot esculenta	scaffold05875	3	CH_mes_133	6	37	0.0000169612
Physcomitrella patens	scaffold_106	1	CH_ppa_70	3	3	0.000770232
Physcomitrella patens	scaffold_11	1	CH_ppa_73	3	3	0.000770232
Physcomitrella patens	scaffold_29	1	CH_ppa_19	4	4	0.00000221521
Physcomitrella patens	scaffold_72	1	CH_ppa_71	3	3	0.000770232
Physcomitrella patens	scaffold_89	1	CH_ppa_72	3	3	0.000770232
Physcomitrella patens	scaffold_106	2	CH_ppa_84	3	3	0.000850782
Physcomitrella patens	scaffold_11	2	CH_ppa_87	3	3	0.000850782
Physcomitrella patens	scaffold_29	2	CH_ppa_19	4	4	0.00000253125
Physcomitrella patens	scaffold_72	2	CH_ppa_85	3	3	0.000850782
Physcomitrella patens	scaffold_89	2	CH_ppa_86	3	3	0.000850782
Physcomitrella patens	scaffold_106	3	CH_ppa_125	3	3	0.000966658
Physcomitrella patens	scaffold_11	3	CH_ppa_127	3	3	0.000966658
Physcomitrella patens	scaffold_29	3	CH_ppa_35	4	4	0.00000300383
Physcomitrella patens	scaffold_72	3	CH_ppa_126	3	3	0.000966658
Physcomitrella patens	scaffold_106	7	CH_ppa_12	3	3	0.000630362
Physcomitrella patens	scaffold_11	7	CH_ppa_15	3	3	0.000630362
Physcomitrella patens	scaffold_72	7	CH_ppa_13	3	3	0.000630362
Physcomitrella patens	scaffold_89	7	CH_ppa_14	3	3	0.000630362
Physcomitrella patens	scaffold_106	8	CH_ppa_9	3	3	0.000703036
Physcomitrella patens	scaffold_11	8	CH_ppa_12	3	3	0.000703036
Physcomitrella patens	scaffold_72	8	CH_ppa_10	3	3	0.000703036
Physcomitrella patens	scaffold_89	8	CH_ppa_11	3	3	0.000703036
Physcomitrella patens	scaffold_106	9	CH_ppa_21	3	3	0.000808338
Physcomitrella patens	scaffold_11	9	CH_ppa_23	3	3	0.000808338
Physcomitrella patens	scaffold_72	9	CH_ppa_22	3	3	0.000808338
Populus trichocarpa	Chr17	1	CH_ptr_121	7	27	0.00000000328289
Populus trichocarpa	Chr13	2	CH_ptr_396	3	3	0.00036747
Populus trichocarpa	Chr17	2	CH_ptr_139	7	27	0.0000000050897
Populus trichocarpa	Chr17	3	CH_ptr_131	8	27	0.0000000000875579
Populus trichocarpa	Chr19	3	CH_ptr_268	4	4	0.00000139504
Prunus persica	scaffold_1	1	CH_ppe_284	3	3	0.000240512
Prunus persica	scaffold_1	2	CH_ppe_353	3	3	0.000294794
Prunus persica	scaffold_1	3	CH_ppe_444	3	3	0.000373403
Solanum lycopersicum	ch02	1	CH_sly_417	3	3	0.000640759
Solanum lycopersicum	ch01	2	CH_sly_79	8	18	0.00000000000335445
Solanum lycopersicum	ch02	2	CH_sly_474	3	3	0.000683466
Solanum lycopersicum	ch01	3	CH_sly_58	11	22	2.98698e-17
Solanum lycopersicum	ch08	3	CH_sly_115	6	6	0.0000000000834406
Solanum lycopersicum	ch12	3	CH_sly_139	8	24	0.000000000732696
Solanum lycopersicum	ch01	6	CH_sly_44	11	22	2.98698e-17
Solanum tuberosum	chr07	1	CH_stu_459	3	3	0.000399455
Solanum tuberosum	chr07	2	CH_stu_537	3	3	0.000463263
Solanum tuberosum	chr07	3	CH_stu_761	3	3	0.000810238
Thellungiella parvula	ch7-4	1	CH_tpa_108	3	3	0.000174538
Thellungiella parvula	ch7-4	2	CH_tpa_144	3	3	0.000221924
Thellungiella parvula	ch7-4	3	CH_tpa_204	3	3	0.000262602
Theobroma cacao	scaffold_2	1	CH_tca_182	4	6	0.00000741693
Theobroma cacao	scaffold_2	2	CH_tca_199	4	6	0.00000962042
Theobroma cacao	scaffold_2	3	CH_tca_258	4	6	0.0000115701
Vitis vinifera	chr7	3	CH_vvi_168	5	6	0.0000000530769
Zea mays	5	3	CH_zma_119	5	12	0.00000217272

Available child term results

GO term	Description	Number of clusters
GO:0003896	DNA primase activity	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V