PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0003700
Description: sequence-specific DNA binding transcription factor activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00045	3	CH_atr_110	8	12	0.0000000624745
Amborella trichopoda	scaffold00045	6	CH_atr_88	10	56	0.0006345
Arabidopsis thaliana	4	3	CH_ath_176	9	10	0.000000770001
Arabidopsis thaliana	1	4	CH_ath_107	32	202	0.000268864
Arabidopsis thaliana	1	5	CH_ath_101	33	202	0.0000848637
Arabidopsis thaliana	1	6	CH_ath_116	33	202	0.000123354
Arabidopsis thaliana	4	6	CH_ath_65	10	14	0.0000034091
Arabidopsis thaliana	1	10	CH_ath_22	33	226	0.00000856682
Arabidopsis thaliana	1	11	CH_ath_9	33	202	0.00000070984
Arabidopsis thaliana	1	12	CH_ath_10	33	202	0.000000942966
Beta vulgaris	Bvchr9.sca026	1	CH_bvu_142	8	25	0.0000813656
Beta vulgaris	Bvchr9.sca026	2	CH_bvu_221	8	25	0.000187113
Beta vulgaris	Bvchr7.sca021	3	CH_bvu_135	7	9	0.000000965758
Beta vulgaris	Bvchr9.sca026	3	CH_bvu_176	10	33	0.0000133368
Beta vulgaris	Bvchr9.sca026	6	CH_bvu_38	10	33	0.0000133368
Carica papaya	supercontig_81	3	CH_cpa_121	6	6	0.0000048856
Citrus sinensis	scaffold00001	1	CH_csi_43	7	7	0.0000000379046
Citrus sinensis	scaffold00001	2	CH_csi_50	7	7	0.000000114845
Citrus sinensis	scaffold00001	4	CH_csi_26	10	44	0.000469769
Eucalyptus grandis	scaffold_1	1	CH_egr_63	14	16	1.16949e-19
Eucalyptus grandis	scaffold_7	1	CH_egr_163	10	13	0.00000000000564231
Eucalyptus grandis	scaffold_1	2	CH_egr_98	14	16	9.93883e-19
Eucalyptus grandis	scaffold_11	3	CH_egr_439	8	10	0.0000000659323
Eucalyptus grandis	scaffold_1	4	CH_egr_58	14	16	1.16949e-19
Eucalyptus grandis	scaffold_7	4	CH_egr_114	10	13	0.00000000000564231
Eucalyptus grandis	scaffold_1	5	CH_egr_71	14	16	9.93883e-19
Eucalyptus grandis	scaffold_7	5	CH_egr_123	10	13	0.000000000025783
Fragaria vesca	LG2	1	CH_fve_103	6	7	0.000000961191
Fragaria vesca	LG2	2	CH_fve_133	6	7	0.00000264509
Fragaria vesca	LG3	3	CH_fve_60	12	22	0.0000000000193079
Fragaria vesca	LG3	6	CH_fve_24	12	22	0.0000000000193079
Fragaria vesca	LG3	9	CH_fve_1	9	22	0.000000148659
Fragaria vesca	LG3	12	CH_fve_1	10	42	0.0000091838
Glycine max	Gm03	1	CH_gma_255	7	11	0.0000874725
Glycine max	Gm13	1	CH_gma_134	7	7	0.000000289038
Glycine max	Gm19	1	CH_gma_335	5	5	0.000482048
Glycine max	Gm03	2	CH_gma_331	7	11	0.000199385
Glycine max	Gm13	2	CH_gma_175	7	7	0.000000666201
Glycine max	Gm19	2	CH_gma_469	5	5	0.000874867
Gossypium raimondii	Chr01	1	CH_gra_96	8	8	0.00000000692131
Gossypium raimondii	Chr01	2	CH_gra_108	8	8	0.0000000190059
Lotus japonicus	chr3	2	CH_lja_132	8	37	0.000220078
Lotus japonicus	chr3	3	CH_lja_112	9	37	0.0000522012
Malus domestica	12	2	CH_mdo_207	10	56	0.000256493
Malus domestica	12	5	CH_mdo_42	10	56	0.000256493
Medicago truncatula	chr1	1	CH_mtr_132	10	20	0.000000000163508
Medicago truncatula	chr1	1	CH_mtr_164	8	12	0.00000000433304
Medicago truncatula	chr2	1	CH_mtr_565	4	4	0.000778571
Medicago truncatula	chr6	1	CH_mtr_159	12	46	0.00000000291091
Medicago truncatula	chr7	1	CH_mtr_442	6	13	0.000135943
Medicago truncatula	chr1	2	CH_mtr_212	8	12	0.0000000109583
Medicago truncatula	chr1	2	CH_mtr_164	10	20	0.000000000519171
Medicago truncatula	chr6	2	CH_mtr_213	12	46	0.0000000113621
Medicago truncatula	chr7	2	CH_mtr_582	6	13	0.000271187
Medicago truncatula	chr1	4	CH_mtr_78	10	20	0.000000000163508
Medicago truncatula	chr6	4	CH_mtr_89	12	46	0.00000000291091
Medicago truncatula	chr1	5	CH_mtr_81	10	20	0.000000000519171
Medicago truncatula	chr6	5	CH_mtr_97	12	46	0.0000000113621
Medicago truncatula	chr2	6	CH_mtr_236	13	104	0.000225095
Oryza sativa ssp. japonica	4	1	CH_osa_235	9	40	0.0000253132
Oryza sativa ssp. japonica	4	2	CH_osa_269	9	40	0.0000499966
Oryza sativa ssp. japonica	11	3	CH_osa_285	5	5	0.0000334097
Oryza sativa ssp. japonica	4	3	CH_osa_416	9	40	0.000250381
Oryza sativa ssp. japonica	4	4	CH_osa_124	11	75	0.0000381816
Oryza sativa ssp. japonica	4	5	CH_osa_140	11	75	0.0000859341
Oryza sativa ssp. japonica	4	6	CH_osa_175	11	75	0.000581463
Physcomitrella patens	scaffold_259	1	CH_ppa_56	5	8	0.000527041
Populus trichocarpa	Chr14	1	CH_ptr_276	5	5	0.000116832
Populus trichocarpa	Chr03	2	CH_ptr_279	6	7	0.0000381951
Populus trichocarpa	Chr14	2	CH_ptr_373	5	5	0.00024528
Populus trichocarpa	Chr01	3	CH_ptr_520	5	5	0.000500189
Populus trichocarpa	Chr12	3	CH_ptr_337	6	6	0.0000130917
Prunus persica	scaffold_1	1	CH_ppe_156	7	9	0.00000042422
Prunus persica	scaffold_1	2	CH_ppe_196	7	9	0.00000114637
Prunus persica	scaffold_7	2	CH_ppe_303	5	5	0.0000849496
Prunus persica	scaffold_1	4	CH_ppe_78	10	36	0.0000100976
Ricinus communis	30174	1	CH_rco_125	5	5	0.0000318622
Ricinus communis	30174	2	CH_rco_149	5	5	0.0000787244
Solanum tuberosum	chr01	1	CH_stu_111	10	11	0.00000000000180236
Solanum tuberosum	chr01	1	CH_stu_267	8	14	0.00000133748
Solanum tuberosum	chr03	1	CH_stu_269	6	6	0.0000014428
Solanum tuberosum	chr08	1	CH_stu_343	6	8	0.0000391269
Solanum tuberosum	chr12	1	CH_stu_54	13	13	1.02746e-18
Solanum tuberosum	chr12	1	CH_stu_378	5	5	0.0000779691
Solanum tuberosum	chr01	2	CH_stu_132	10	11	0.00000000000605806
Solanum tuberosum	chr01	2	CH_stu_307	8	14	0.00000348341
Solanum tuberosum	chr03	2	CH_stu_298	6	6	0.00000298375
Solanum tuberosum	chr08	2	CH_stu_416	6	8	0.0000805788
Solanum tuberosum	chr12	2	CH_stu_57	13	13	4.99984e-18
Solanum tuberosum	chr12	2	CH_stu_429	5	5	0.000142789
Solanum tuberosum	chr01	3	CH_stu_177	11	13	0.00000000000921577
Solanum tuberosum	chr08	3	CH_stu_674	6	8	0.000288921
Solanum tuberosum	chr01	4	CH_stu_69	10	11	0.00000000000180236
Solanum tuberosum	chr01	4	CH_stu_115	10	31	0.00000518864
Solanum tuberosum	chr12	4	CH_stu_45	13	13	1.02746e-18
Solanum tuberosum	chr01	5	CH_stu_70	10	11	0.00000000000605806
Solanum tuberosum	chr01	5	CH_stu_130	10	31	0.0000166869
Solanum tuberosum	chr12	5	CH_stu_47	13	13	4.99984e-18
Solanum tuberosum	chr01	6	CH_stu_92	11	13	0.00000000000921577
Theobroma cacao	scaffold_9	3	CH_tca_410	5	6	0.000527457
Vitis vinifera	chr16	1	CH_vvi_60	11	16	0.000000000000892266
Vitis vinifera	chr16	4	CH_vvi_40	11	16	0.000000000000892266
Zea mays	1	1	CH_zma_172	5	5	0.000146451
Zea mays	2	1	CH_zma_219	11	56	0.000681112
Zea mays	1	2	CH_zma_193	5	5	0.000218321
Zea mays	4	3	CH_zma_166	6	6	0.0000149653
Zea mays	2	4	CH_zma_37	11	56	0.000681112

Available child term results

GO term	Description	Number of clusters
GO:0001187	RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity	1

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V