PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_104	2	CH_cpa_185	2	2	0.000291248
Carica papaya	supercontig_104	3	CH_cpa_282	2	2	0.000291248
Citrus sinensis	scaffold00018	2	CH_csi_197	2	2	0.000694887
Citrus sinensis	scaffold00018	3	CH_csi_251	2	2	0.000694887
Eucalyptus grandis	scaffold_1	2	CH_egr_84	7	8	8.60301e-20
Eucalyptus grandis	scaffold_11	2	CH_egr_287	4	4	0.000000000598997
Eucalyptus grandis	scaffold_1	3	CH_egr_100	7	8	8.60301e-20
Eucalyptus grandis	scaffold_11	3	CH_egr_337	4	4	0.000000000598997
Fragaria vesca	LG6	2	CH_fve_297	2	2	0.000359271
Fragaria vesca	LG6	3	CH_fve_380	2	2	0.000359271
Malus domestica	14	2	CH_mdo_292	2	4	0.000830788
Malus domestica	14	3	CH_mdo_405	2	4	0.000830788
Medicago truncatula	chr1	2	CH_mtr_137	4	6	0.0000000000454739
Medicago truncatula	chr1	3	CH_mtr_171	4	6	0.0000000000454739
Populus trichocarpa	Chr06	2	CH_ptr_442	2	2	0.000747031
Populus trichocarpa	Chr06	3	CH_ptr_547	2	2	0.000747031
Prunus persica	scaffold_7	2	CH_ppe_392	2	2	0.00043251
Prunus persica	scaffold_7	3	CH_ppe_472	2	2	0.00043251
Vitis vinifera	chr8	2	CH_vvi_358	2	2	0.000752106

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V