PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A06	2	CH_bra_190	3	6	0.00013067
Brassica rapa	A05	3	CH_bra_179	3	4	0.0000261547
Brassica rapa	A06	3	CH_bra_226	3	6	0.00013067
Eucalyptus grandis	scaffold_5	2	CH_egr_64	12	50	1.38922e-21
Eucalyptus grandis	scaffold_5	2	CH_egr_70	12	55	5.00288e-21
Eucalyptus grandis	scaffold_5	3	CH_egr_89	12	55	5.00288e-21
Eucalyptus grandis	scaffold_5	3	CH_egr_80	12	50	1.38922e-21
Eucalyptus grandis	scaffold_5	5	CH_egr_8	25	260	1.83801e-40
Eucalyptus grandis	scaffold_5	6	CH_egr_13	25	260	1.83801e-40
Fragaria vesca	LG7	2	CH_fve_165	3	5	0.0000153741
Fragaria vesca	LG7	3	CH_fve_225	3	5	0.0000153741
Manihot esculenta	scaffold06908	2	CH_mes_29	4	4	0.000000000846583
Manihot esculenta	scaffold08265	2	CH_mes_74	3	3	0.00000222969
Manihot esculenta	scaffold06908	3	CH_mes_36	4	4	0.000000000846583
Manihot esculenta	scaffold08265	3	CH_mes_105	3	3	0.00000222969

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V