PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr1.sca002	2	CH_bvu_70	4	8	0.0000000238044
Beta vulgaris	Bvchr1.sca002	3	CH_bvu_90	4	8	0.0000000238044
Medicago truncatula	chr6	2	CH_mtr_370	5	36	0.00000421452
Medicago truncatula	chr7	2	CH_mtr_14	13	31	4.17028e-29
Medicago truncatula	chr6	3	CH_mtr_452	5	36	0.00000421452
Medicago truncatula	chr7	3	CH_mtr_18	13	31	4.17028e-29
Medicago truncatula	chr7	5	CH_mtr_14	13	31	4.17028e-29
Medicago truncatula	chr7	6	CH_mtr_21	13	31	4.17028e-29
Populus trichocarpa	Chr08	3	CH_ptr_217	4	10	0.0000000777973

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V