PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_3	3	CH_egr_512	4	9	0.000000666073
Physcomitrella patens	scaffold_199	3	CH_ppa_46	3	3	0.0000325191
Solanum lycopersicum	ch10	2	CH_sly_22	10	22	4.03165e-22
Solanum lycopersicum	ch03	3	CH_sly_561	3	5	0.000415902
Solanum lycopersicum	ch10	3	CH_sly_26	11	22	1.2702e-23
Solanum lycopersicum	ch10	5	CH_sly_21	10	22	4.03165e-22
Solanum lycopersicum	ch10	6	CH_sly_28	11	22	1.2702e-23
Solanum tuberosum	chr10	1	CH_stu_218	5	24	0.000000111734
Solanum tuberosum	chr10	2	CH_stu_234	5	24	0.000000111734
Solanum tuberosum	chr10	3	CH_stu_366	5	24	0.00000047171
Zea mays	1	9	CH_zma_9	3	6	0.0000779195

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V