PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0000154
Description: rRNA modification

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	1	CH_ath_139	4	4	0.000000856132
Arabidopsis thaliana	2	1	CH_ath_310	3	3	0.00038873
Arabidopsis thaliana	2	1	CH_ath_244	6	51	0.0000660771
Arabidopsis thaliana	3	1	CH_ath_308	3	3	0.00038873
Arabidopsis thaliana	3	1	CH_ath_309	3	3	0.00038873
Arabidopsis thaliana	4	1	CH_ath_140	4	4	0.000000856132
Arabidopsis thaliana	5	1	CH_ath_311	3	3	0.00038873
Arabidopsis thaliana	2	2	CH_ath_376	3	3	0.00038873
Arabidopsis thaliana	2	2	CH_ath_285	6	51	0.0000660771
Arabidopsis thaliana	2	2	CH_ath_168	4	4	0.000000856132
Arabidopsis thaliana	3	2	CH_ath_374	3	3	0.00038873
Arabidopsis thaliana	3	2	CH_ath_375	3	3	0.00038873
Arabidopsis thaliana	4	2	CH_ath_169	4	4	0.000000856132
Arabidopsis thaliana	5	2	CH_ath_377	3	3	0.00038873
Arabidopsis thaliana	2	3	CH_ath_297	6	51	0.0000660771
Arabidopsis thaliana	2	3	CH_ath_177	4	4	0.000000856132
Arabidopsis thaliana	2	3	CH_ath_398	3	3	0.00038873
Arabidopsis thaliana	3	3	CH_ath_396	3	3	0.00038873
Arabidopsis thaliana	3	3	CH_ath_397	3	3	0.00038873
Arabidopsis thaliana	4	3	CH_ath_178	4	4	0.000000856132
Arabidopsis thaliana	5	3	CH_ath_399	3	3	0.00038873
Arabidopsis thaliana	2	7	CH_ath_26	6	51	0.0000915922
Arabidopsis thaliana	2	7	CH_ath_14	4	4	0.00000104498
Arabidopsis thaliana	2	7	CH_ath_34	3	3	0.000443976
Arabidopsis thaliana	3	7	CH_ath_33	3	3	0.000443976
Arabidopsis thaliana	3	7	CH_ath_32	3	3	0.000443976
Arabidopsis thaliana	4	7	CH_ath_15	4	4	0.00000104498
Arabidopsis thaliana	5	7	CH_ath_35	3	3	0.000443976
Arabidopsis thaliana	2	8	CH_ath_26	6	51	0.0000915922
Arabidopsis thaliana	2	8	CH_ath_13	4	4	0.00000104498
Arabidopsis thaliana	2	8	CH_ath_34	3	3	0.000443976
Arabidopsis thaliana	3	8	CH_ath_33	3	3	0.000443976
Arabidopsis thaliana	3	8	CH_ath_32	3	3	0.000443976
Arabidopsis thaliana	4	8	CH_ath_14	4	4	0.00000104498
Arabidopsis thaliana	5	8	CH_ath_35	3	3	0.000443976
Arabidopsis thaliana	2	9	CH_ath_26	6	51	0.0000915922
Arabidopsis thaliana	2	9	CH_ath_12	4	4	0.00000104498
Arabidopsis thaliana	2	9	CH_ath_33	3	3	0.000443976
Arabidopsis thaliana	3	9	CH_ath_31	3	3	0.000443976
Arabidopsis thaliana	3	9	CH_ath_32	3	3	0.000443976
Arabidopsis thaliana	4	9	CH_ath_13	4	4	0.00000104498
Arabidopsis thaliana	5	9	CH_ath_34	3	3	0.000443976

Available child term results

GO term	Description	Number of clusters
GO:0031167	rRNA methylation	5

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V