PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0000003
Description: reproduction

Cluster overview

No results found

Available child term results

GO term	Description	Number of clusters
GO:0000212	meiotic spindle organization	2
GO:0000712	resolution of meiotic recombination intermediates	5
GO:0003006	developmental process involved in reproduction	2
GO:0006279	premeiotic DNA replication	2
GO:0007060	male meiosis chromosome segregation	8
GO:0007065	male meiosis sister chromatid cohesion	3
GO:0007129	synapsis	2
GO:0007338	single fertilization	5
GO:0009554	megasporogenesis	3
GO:0009567	double fertilization forming a zygote and endosperm	12
GO:0009793	embryo development ending in seed dormancy	11
GO:0009829	cell wall modification involved in fruit ripening	2
GO:0009836	fruit ripening, climacteric	2
GO:0009860	pollen tube growth	6
GO:0009875	pollen-pistil interaction	2
GO:0009901	anther dehiscence	26
GO:0009908	flower development	5
GO:0009910	negative regulation of flower development	3
GO:0009911	positive regulation of flower development	2
GO:0009960	endosperm development	70
GO:0010032	meiotic chromosome condensation	3
GO:0010068	protoderm histogenesis	2
GO:0010071	root meristem specification	2
GO:0010072	primary shoot apical meristem specification	4
GO:0010080	regulation of floral meristem growth	1
GO:0010162	seed dormancy process	1
GO:0010183	pollen tube guidance	9
GO:0010214	seed coat development	1
GO:0010228	vegetative to reproductive phase transition of meristem	10
GO:0010231	maintenance of seed dormancy	6
GO:0010431	seed maturation	22
GO:0010483	pollen tube reception	2
GO:0019953	sexual reproduction	49
GO:0032504	multicellular organism reproduction	1
GO:0042138	meiotic DNA double-strand break formation	2
GO:0044702	single organism reproductive process	3
GO:0045128	negative regulation of reciprocal meiotic recombination	4
GO:0048235	pollen sperm cell differentiation	14
GO:0048240	sperm capacitation	7
GO:0048437	floral organ development	2
GO:0048439	flower morphogenesis	2
GO:0048446	petal morphogenesis	2
GO:0048448	stamen morphogenesis	2
GO:0048477	oogenesis	25
GO:0048479	style development	2
GO:0048481	ovule development	2
GO:0048497	maintenance of floral organ identity	5
GO:0048544	recognition of pollen	465
GO:0048573	photoperiodism, flowering	1
GO:0048578	positive regulation of long-day photoperiodism, flowering	2
GO:0048579	negative regulation of long-day photoperiodism, flowering	2
GO:0048609	multicellular organismal reproductive process	2
GO:0048610	cellular process involved in reproduction	10
GO:0048657	anther wall tapetum cell differentiation	2
GO:0048658	anther wall tapetum development	4
GO:0048700	acquisition of desiccation tolerance in seed	4
GO:0048868	pollen tube development	2
GO:0051446	positive regulation of meiotic cell cycle	2
GO:0055047	generative cell mitosis	1
GO:0060860	regulation of floral organ abscission	2
GO:0080001	mucilage extrusion from seed coat	6
GO:0080092	regulation of pollen tube growth	8
GO:0080112	seed growth	1
GO:0080113	regulation of seed growth	2
GO:0080155	regulation of double fertilization forming a zygote and endosperm	12
GO:0080173	male-female gamete recognition during double fertilization	2
GO:0080187	floral organ senescence	2
GO:0090306	spindle assembly involved in meiosis	2
GO:2000014	regulation of endosperm development	2
GO:2000693	positive regulation of seed maturation	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V