PLAZA 3.0 Dicots : Functional Clustering

Functional clusters: Vitis vinifera

Tool for the visualization of the physical clustering of functionally related genes.

Chromosomal overview

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Data Overview

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Experiments Overview

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal	Cluster count
1	GO	Primary GO data only.	2	30	80	0.001	X	307
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X	366
3	GO	All GO data.	2	30	80	0.001	X	480
4	GO	Primary GO data only.	10	150	300	0.001	X	104
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X	105
6	GO	All GO data.	10	150	300	0.001	X	137
7	GO	Primary GO data only.	2	30	80	0.001	V	7
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V	9
9	GO	All GO data.	2	30	80	0.001	V	18
10	GO	Primary GO data only.	10	150	300	0.001	V	5
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V	9
12	GO	All GO data.	10	150	300	0.001	V	10
13	InterPro	No filter applied.	2	30	80	0.001	X	700
14	InterPro	No filter applied.	10	150	300	0.001	X	93
15	InterPro	No filter applied.	2	30	80	0.001	V	18
17	MapMan	No filter applied.	2	30	80	0.001	X	445
18	MapMan	No filter applied.	10	150	300	0.001	X	116
19	MapMan	No filter applied.	2	30	80	0.001	V	6
20	MapMan	No filter applied.	10	150	300	0.001	V	4