PLAZA 3.0 Dicots : Functional Clustering

Functional clusters: Brassica rapa

Tool for the visualization of the physical clustering of functionally related genes.

Chromosomal overview

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Data Overview

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Experiments Overview

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal	Cluster count
1	GO	Primary GO data only.	2	30	80	0.001	X	195
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X	308
3	GO	All GO data.	2	30	80	0.001	X	366
4	GO	Primary GO data only.	10	150	300	0.001	X	22
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X	38
6	GO	All GO data.	10	150	300	0.001	X	52
7	GO	Primary GO data only.	2	30	80	0.001	V	6
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V	5
9	GO	All GO data.	2	30	80	0.001	V	6
10	GO	Primary GO data only.	10	150	300	0.001	V	1
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V	1
12	GO	All GO data.	10	150	300	0.001	V	1
13	InterPro	No filter applied.	2	30	80	0.001	X	510
14	InterPro	No filter applied.	10	150	300	0.001	X	28
15	InterPro	No filter applied.	2	30	80	0.001	V	10
17	MapMan	No filter applied.	2	30	80	0.001	X	299
18	MapMan	No filter applied.	10	150	300	0.001	X	43
19	MapMan	No filter applied.	2	30	80	0.001	V	1
20	MapMan	No filter applied.	10	150	300	0.001	V	4