View conserved binding sites


Gene
VV18G15440
Description
name=GSVIVG01034516001;
Alias
GSVIVG01034516001;GSVIVG01034516001;GSVIVT01034516001
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-187
Upstream-188
Matrix_109GBF3Not availableUpstream-187
Upstream-188
Matrix_113ABI5Not availableUpstream-187
Upstream-188
Matrix_122ABF1;AREB2Not availableUpstream-187
Upstream-188
Matrix_129ABF1Not availableUpstream-188
Upstream-189
Matrix_145GBF4;AT5G44080Not availableUpstream-189
Upstream-190
Matrix_192FHY3/FAR1Not availableUpstream-185
Upstream-186
Matrix_194HYH;HY5Not availableUpstream-185
Upstream-186
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-185
Upstream-186
Matrix_24POC1Not availableUpstream-184
Upstream-185
Matrix_25AP3Not availableIntron2021
Matrix_264ATAREB1Not availableUpstream-185
Upstream-186
Upstream-188
Upstream-189
Matrix_300bZIP68;bZIP16Not availableUpstream-188
Upstream-189
Matrix_301PIL5Not availableUpstream-183
Upstream-184
Matrix_338AP2Not availableUpstream-185
Upstream-186
Matrix_339bHLH104Not availableUpstream-369
Matrix_35YAB5;YAB3Not availableUpstream-198
Matrix_356PRR5Not availableUpstream-185
Upstream-186
Matrix_359FLCNot availableUpstream-186
Upstream-187
Matrix_389ILR3Not availableUpstream-369
Matrix_403BZR1Not availableUpstream-186
Upstream-187
Matrix_443AGL15Not availableUpstream-186
Upstream-187
Matrix_47AtMYB77Not availableUpstream-269
Matrix_482AT2G25650;AT4G00270Not availableUpstream-201
Matrix_488ABF1Not availableUpstream-187
Upstream-188
Matrix_490AtMYB77;ATMYB44Not availableUpstream-273
Upstream-274
Matrix_55PIF3Not availableUpstream-187
Upstream-188
Matrix_68AtMYB77More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84Upstream-269
Matrix_77PRR5Not availableUpstream-186
Upstream-187
Matrix_80BIM1Not availableUpstream-187
Upstream-188
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-167
Upstream-173
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-190
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Intron2006
Upstream-190
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationIntron2026
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-189
Upstream-190
Upstream-241
Upstream-242
Upstream-478
Upstream-479
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-275
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-180
Motif_244ABRE-like binding site motifNot availableUpstream-188
Upstream-680
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-189
Motif_26GRF7Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2AIntron1990
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisIntron2003
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-160
Upstream-165
Upstream-237
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-242
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-190
Upstream-682
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-190
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-196
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Intron2026
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-188
Upstream-680
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-354
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-188
Upstream-680
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneIntron1984
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-189