| Matrix_278 | AtbZIP44 | Not available | Upstream | -537 |
| Matrix_399 | TGA1 | Not available | Upstream | -539 |
| Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -539 |
| Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Intron | 4293 |
| | | Intron | 4291 |
| | | Intron | 4289 |
| | | Intron | 4287 |
| | | Intron | 4285 |
| | | Intron | 4283 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -538 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -365 |
| | | Upstream | -368 |
| | | Upstream | -371 |
| | | Upstream | -1938 |
| | | Upstream | -1941 |
| | | Upstream | -1944 |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -540 |
| Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Intron | 4293 |
| | | Intron | 4291 |
| | | Intron | 4289 |
| | | Intron | 4287 |
| | | Intron | 4285 |
| | | Intron | 4283 |
| | | Intron | 4281 |
| Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -541 |
| Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Intron | 3499 |
| | | Intron | 2995 |
| | | Intron | 2988 |
| | | Intron | 2276 |
| Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -541 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 4292 |
| | | Intron | 4290 |
| | | Intron | 4288 |
| | | Intron | 4286 |
| | | Intron | 4284 |
| | | Intron | 4282 |
| | | Intron | 4280 |
| | | Intron | 4278 |
| | | Intron | 4276 |
| | | Intron | 4274 |
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