Matrix_102 | WRKY21 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_141 | AT3G25990 | Not available | Upstream | -580 |
Matrix_148 | WRKY60 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_173 | ZAP1 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_202 | WRKY71;WRKY28;WRKY8 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_232 | TCP23 | Not available | Upstream | -191 |
Matrix_245 | WRKY62;WRKY38 | Not available | Upstream | -200 |
Matrix_249 | WRKY11 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -563 |
Matrix_260 | CAMTA3 | Not available | Upstream | -567 |
Matrix_293 | WRKY38 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_297 | TCP15 | Not available | Upstream | -191 |
Matrix_314 | WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_329 | WRKY12 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_35 | YAB5;YAB3 | Not available | Upstream | -130 |
Matrix_357 | WRKY61;WRKY6;WRKY9;WRKY36;WRKY47;WRKY42;WRKY31;WRKY72 | Not available | Upstream | -198 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_376 | WRKY45 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_415 | WRKY27 | Not available | Upstream | -199 |
| | | Upstream | -200 |
Matrix_416 | ASL5 | Not available | Upstream | -589 |
Matrix_418 | KNAT6;KNAT2 | Not available | Upstream | -563 |
Matrix_500 | WRKY43 | Not available | Upstream | -198 |
| | | Upstream | -199 |
Matrix_507 | TCP3 | Not available | Upstream | -191 |
Matrix_58 | WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30 | Not available | Upstream | -197 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -1004 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -143 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Upstream | -580 |
| | | Upstream | -592 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -120 |
| | | Upstream | -198 |
| | | Upstream | -598 |
| | | Upstream | -1113 |
| | | Upstream | -1207 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -135 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -956 |
| | | Upstream | -1113 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -569 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -120 |
| | | Upstream | -198 |
| | | Upstream | -598 |
| | | Upstream | -1113 |
| | | Upstream | -1207 |
Motif_226 | E2F1OSPCNA | re2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue | Upstream | -98 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -201 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -565 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -570 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -120 |
| | | Upstream | -198 |
| | | Upstream | -598 |
| | | Upstream | -1113 |
| | | Upstream | -1207 |
Motif_425 | ANAC013;ANAC016;ANAC017;ANAC053;ANAC078 | A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana | Upstream | -309 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -98 |
| | | Upstream | -557 |
| | | Upstream | -767 |
Motif_462 | TE2F2NTPCNA | te2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue | Upstream | -557 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -1212 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -307 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -950 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -192 |
Motif_626 | ACGTTBOX | T-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIF | Upstream | -333 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -97 |
Motif_651 | E2Fc;E2Fd;E2Fe;E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | Upstream | -97 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -101 |
Motif_663 | E2F binding site motif;E2F/DP BS in AtCDC6 | Not available | Upstream | -98 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -89 |