View conserved binding sites


Gene
VV14G10890
Description
name=GSVIVG01032388001;
Alias
GSVIVG01032388001;GSVIVG01032388001;GSVIVT01032388001
Binding siteNameDescriptionLocationPosition
Matrix_102WRKY21Not availableUpstream-199
Upstream-200
Matrix_141AT3G25990Not availableUpstream-580
Matrix_148WRKY60Not availableUpstream-198
Upstream-199
Matrix_173ZAP1Not availableUpstream-201
Upstream-202
Matrix_196TCP20;AT5G41030Not availableUpstream-191
Upstream-192
Matrix_202WRKY71;WRKY28;WRKY8Not availableUpstream-199
Upstream-200
Matrix_232TCP23Not availableUpstream-191
Matrix_245WRKY62;WRKY38Not availableUpstream-200
Matrix_249WRKY11Not availableUpstream-198
Upstream-199
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-563
Matrix_260CAMTA3Not availableUpstream-567
Matrix_293WRKY38Not availableUpstream-198
Upstream-199
Matrix_297TCP15Not availableUpstream-191
Matrix_314WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52Not availableUpstream-198
Upstream-199
Matrix_316WRKY15;WRKY39;WRKY7;WRKY74Not availableUpstream-198
Upstream-199
Matrix_329WRKY12Not availableUpstream-198
Upstream-199
Matrix_35YAB5;YAB3Not availableUpstream-130
Matrix_357WRKY61;WRKY6;WRKY9;WRKY36;WRKY47;WRKY42;WRKY31;WRKY72Not availableUpstream-198
Matrix_370WRKY50;WRKY51Not availableUpstream-199
Upstream-200
Matrix_376WRKY45Not availableUpstream-198
Upstream-199
Matrix_415WRKY27Not availableUpstream-199
Upstream-200
Matrix_416ASL5Not availableUpstream-589
Matrix_418KNAT6;KNAT2Not availableUpstream-563
Matrix_500WRKY43Not availableUpstream-198
Upstream-199
Matrix_507TCP3Not availableUpstream-191
Matrix_58WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30Not availableUpstream-197
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-1004
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-143
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-580
Upstream-592
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-120
Upstream-198
Upstream-598
Upstream-1113
Upstream-1207
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-135
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-956
Upstream-1113
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-569
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-120
Upstream-198
Upstream-598
Upstream-1113
Upstream-1207
Motif_226E2F1OSPCNAre2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-98
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-201
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-565
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-570
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-120
Upstream-198
Upstream-598
Upstream-1113
Upstream-1207
Motif_425ANAC013;ANAC016;ANAC017;ANAC053;ANAC078A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thalianaUpstream-309
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-98
Upstream-557
Upstream-767
Motif_462TE2F2NTPCNAte2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-557
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-1212
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-307
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-950
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-192
Motif_626ACGTTBOXT-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIFUpstream-333
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-97
Motif_651E2Fc;E2Fd;E2Fe;E2FaThe E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plantsUpstream-97
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-101
Motif_663E2F binding site motif;E2F/DP BS in AtCDC6Not availableUpstream-98
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-89