View conserved binding sites


Gene
VV14G09960
Description
name=GSVIVG01031282001;
Alias
GSVIVG01031282001;GSVIVT01031282001;GSVIVG01031282001
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-1125
Upstream-1276
Matrix_105SPL14Not availableUpstream-583
Upstream-584
Matrix_109GBF3Not availableUpstream-1276
Matrix_113ABI5Not availableUpstream-1276
Matrix_122ABF1;AREB2Not availableUpstream-458
Upstream-591
Upstream-1126
Upstream-1277
Matrix_129ABF1Not availableUpstream-1277
Matrix_134ABF1Not availableUpstream-593
Upstream-1126
Upstream-1277
Matrix_145GBF4;AT5G44080Not availableUpstream-1278
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-454
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-1059
Upstream-1263
Matrix_156POC1Not availableUpstream-1276
Matrix_188SPL4Not availableUpstream-587
Matrix_192FHY3/FAR1Not availableUpstream-1274
Matrix_194HYH;HY5Not availableUpstream-1123
Upstream-1274
Matrix_214AP1Not availableUpstream-1275
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-593
Upstream-1274
Matrix_231HDG2;HDG3;ATML1;HB-7Not availableUpstream-382
Matrix_24POC1Not availableUpstream-454
Matrix_264ATAREB1Not availableUpstream-1277
Matrix_297TCP15Not availableUpstream-1187
Matrix_300bZIP68;bZIP16Not availableUpstream-1277
Matrix_33SPL11;SPL10;SPL2Not availableUpstream-587
Matrix_331GBF1Not availableUpstream-1276
Matrix_332SPT;ALCNot availableUpstream-1277
Matrix_338AP2Not availableUpstream-1123
Upstream-1274
Matrix_342SPL14Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon ResonanceUpstream-583
Matrix_345POC1Not availableUpstream-455
Matrix_348AT5G51910Not availableUpstream-1188
Matrix_356PRR5Not availableUpstream-451
Upstream-1119
Upstream-1274
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-78
Upstream-1042
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-1059
Matrix_443AGL15Not availableUpstream-1124
Upstream-1275
Matrix_480BES1Not availableUpstream-1276
Matrix_488ABF1Not availableUpstream-457
Upstream-1099
Matrix_55PIF3Not availableUpstream-1276
Matrix_7PIF4Not availableUpstream-1276
Upstream-1277
Matrix_77PRR5Not availableUpstream-457
Upstream-1125
Upstream-1291
Matrix_85SPL5Not availableUpstream-588
Matrix_92AT1G33760Not availableUpstream-1058
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-787
Upstream-1278
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1278
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-375
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-1276
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-459
Upstream-592
Upstream-787
Upstream-1127
Upstream-1277
Upstream-1278
Motif_244ABRE-like binding site motifNot availableUpstream-1276
Upstream-1278
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-1276
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1278
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-1264
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-1277
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-374
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-1271
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-1276
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-1276
Motif_638ABRE binding site motifNot availableUpstream-1276
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-1275
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-1059