View conserved binding sites


Gene
VV14G09900
Description
name=GSVIVG01031274001;
Alias
GSVIVG01031274001;GSVIVT01031274001;GSVIVG01031274001
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-934
Upstream-1086
Matrix_109GBF3Not availableUpstream-1086
Matrix_113ABI5Not availableUpstream-1086
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-913
Matrix_122ABF1;AREB2Not availableUpstream-334
Upstream-935
Upstream-1087
Matrix_129ABF1Not availableUpstream-1087
Matrix_134ABF1Not availableUpstream-336
Upstream-935
Upstream-1087
Matrix_14ZCW32;AT5G62610Not availableUpstream-1087
Matrix_145GBF4;AT5G44080Not availableUpstream-1088
Matrix_147ERF3;AT1G80580Not availableUpstream-230
Matrix_156POC1Not availableUpstream-1086
Matrix_188SPL4Not availableUpstream-330
Matrix_192FHY3/FAR1Not availableUpstream-1084
Matrix_194HYH;HY5Not availableUpstream-914
Upstream-932
Upstream-1084
Matrix_214AP1Not availableUpstream-1085
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-336
Upstream-1051
Upstream-1084
Matrix_231HDG2;HDG3;ATML1;HB-7Not availableUpstream-124
Matrix_247PIF3Not availableUpstream-917
Matrix_264ATAREB1Not availableUpstream-1087
Matrix_296GBF2Not availableUpstream-917
Matrix_300bZIP68;bZIP16Not availableUpstream-917
Upstream-1087
Matrix_301PIL5Not availableUpstream-912
Matrix_33SPL11;SPL10;SPL2Not availableUpstream-330
Matrix_331GBF1Not availableUpstream-1086
Matrix_332SPT;ALCNot availableUpstream-1087
Matrix_338AP2Not availableUpstream-914
Upstream-932
Upstream-1084
Matrix_345POC1Not availableUpstream-913
Upstream-914
Matrix_348AT5G51910Not availableUpstream-997
Matrix_356PRR5Not availableUpstream-928
Upstream-1084
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-852
Matrix_38SPL14Not availableUpstream-332
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-869
Matrix_443AGL15Not availableUpstream-915
Upstream-933
Upstream-1085
Matrix_45DRNNot availableUpstream-230
Matrix_480BES1Not availableUpstream-1086
Matrix_488ABF1Not availableUpstream-334
Upstream-909
Matrix_55PIF3Not availableUpstream-1086
Matrix_7PIF4Not availableUpstream-1086
Upstream-1087
Matrix_77PRR5Not availableUpstream-934
Matrix_92AT1G33760Not availableUpstream-868
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-31
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1088
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1088
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-117
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-1086
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-335
Upstream-936
Upstream-1087
Upstream-1088
Motif_244ABRE-like binding site motifNot availableUpstream-1051
Upstream-1086
Upstream-1088
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-777
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-1086
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-953
Upstream-1088
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-232
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-1074
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-1087
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-116
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-1081
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-1052
Upstream-1086
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-1052
Upstream-1086
Motif_638ABRE binding site motifNot availableUpstream-1051
Upstream-1086
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-1052
Upstream-1085
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-502
Upstream-869
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-30
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-1050
Upstream-1085