View conserved binding sites


Gene
VV09G05140
Description
name=GSVIVG01017089001;
Alias
GSVIVG01017089001;GSVIVG01017089001;GSVIVT01017089001
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-262
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-262
Matrix_109GBF3Not availableUpstream-262
Matrix_113ABI5Not availableUpstream-262
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-259
Upstream-260
Matrix_120BEE2Not availableUpstream-263
Matrix_122ABF1;AREB2Not availableUpstream-262
Upstream-263
Matrix_128TGA2Not availableUpstream-343
Upstream-1616
Matrix_129ABF1Not availableUpstream-263
Upstream-1442
Matrix_14ZCW32;AT5G62610Not availableUpstream-263
Upstream-264
Matrix_145GBF4;AT5G44080Not availableUpstream-264
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-259
Matrix_156POC1Not availableUpstream-262
Upstream-264
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-263
Matrix_214AP1Not availableUpstream-261
Matrix_233MYC3Not availableUpstream-264
Matrix_24POC1Not availableUpstream-259
Matrix_247PIF3Not availableUpstream-263
Matrix_264ATAREB1Not availableUpstream-260
Matrix_296GBF2Not availableUpstream-263
Upstream-264
Matrix_300bZIP68;bZIP16Not availableUpstream-263
Upstream-264
Matrix_301PIL5Not availableUpstream-258
Upstream-264
Matrix_311TGA1Not availableUpstream-343
Matrix_330MYC2;TT8Not availableUpstream-263
Matrix_331GBF1Not availableUpstream-262
Matrix_332SPT;ALCNot availableUpstream-263
Upstream-264
Matrix_345POC1Not availableUpstream-259
Upstream-260
Matrix_389ILR3Not availableUpstream-263
Matrix_403BZR1Not availableUpstream-261
Matrix_438AtbZIP63Not availableUpstream-261
Upstream-263
Matrix_443AGL15Not availableUpstream-261
Matrix_465MYC4Not availableUpstream-263
Matrix_48PINot availableUpstream-382
Matrix_480BES1Not availableUpstream-262
Upstream-263
Matrix_488ABF1Not availableUpstream-262
Matrix_53MYC3Not availableUpstream-261
Upstream-265
Matrix_55PIF3Not availableUpstream-262
Matrix_60AT1G01260;AT5G57150Not availableUpstream-264
Matrix_64PIF5Not availableUpstream-264
Matrix_7PIF4Not availableUpstream-263
Upstream-265
Matrix_80BIM1Not availableUpstream-262
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-264
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-21
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-264
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-165
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-374
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-263
Upstream-264
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-747
Upstream-818
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-1615
Upstream-1617
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-263
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-43
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-261
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-1615
Upstream-1617
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-194
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-194
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-375
Upstream-377
Upstream-379
Upstream-381
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-249