Matrix_104 | PI | Not available | Upstream | -196 |
Matrix_109 | GBF3 | Not available | Upstream | -196 |
| | | Upstream | -194 |
Matrix_113 | ABI5 | Not available | Upstream | -196 |
| | | Upstream | -194 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -199 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -195 |
Matrix_129 | ABF1 | Not available | Upstream | -195 |
Matrix_134 | ABF1 | Not available | Upstream | -195 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -195 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -194 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -199 |
Matrix_156 | POC1 | Not available | Upstream | -196 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -198 |
| | | Upstream | -194 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -198 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -195 |
Matrix_214 | AP1 | Not available | Upstream | -197 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -198 |
Matrix_24 | POC1 | Not available | Upstream | -199 |
Matrix_247 | PIF3 | Not available | Upstream | -195 |
Matrix_264 | ATAREB1 | Not available | Upstream | -195 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -195 |
| | | Upstream | -194 |
Matrix_301 | PIL5 | Not available | Upstream | -194 |
Matrix_331 | GBF1 | Not available | Upstream | -196 |
| | | Upstream | -194 |
Matrix_332 | SPT;ALC | Not available | Upstream | -195 |
Matrix_338 | AP2 | Not available | Upstream | -198 |
Matrix_345 | POC1 | Not available | Upstream | -199 |
Matrix_356 | PRR5 | Not available | Upstream | -202 |
| | | Upstream | -198 |
Matrix_389 | ILR3 | Not available | Upstream | -195 |
Matrix_396 | AP3 | Not available | Upstream | -57 |
Matrix_403 | BZR1 | Not available | Upstream | -197 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -195 |
Matrix_443 | AGL15 | Not available | Upstream | -197 |
Matrix_480 | BES1 | Not available | Upstream | -196 |
Matrix_488 | ABF1 | Not available | Upstream | -203 |
Matrix_55 | PIF3 | Not available | Upstream | -196 |
Matrix_7 | PIF4 | Not available | Upstream | -195 |
Matrix_77 | PRR5 | Not available | Upstream | -196 |
Matrix_80 | BIM1 | Not available | Upstream | -194 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -108 |
Motif_120 | ABRETAEM | ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC | Upstream | -195 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -193 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -200 |
| | | Upstream | -193 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -195 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -194 |
| | | Upstream | -193 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -56 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -323 |
| | | Upstream | -195 |
| | | Upstream | -193 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -193 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -195 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -321 |
| | | Upstream | -193 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -55 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -194 |
Motif_483 | ABREMOTIFAOSOSEM | motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | Upstream | -323 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -195 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -195 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -211 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -323 |
| | | Upstream | -195 |
| | | Upstream | -192 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -195 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -196 |
Motif_668 | TCA1MOTIF | TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter | Upstream | -116 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -323 |
| | | Upstream | -192 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -196 |