View conserved binding sites


Gene
VV06G10820
Description
name=GSVIVG01037265001;
Alias
GSVIVT01037265001;GSVIVG01037265001;GSVIVG01037265001
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-161
Upstream-162
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-163
Upstream-164
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-161
Upstream-162
Matrix_209RAP2.6Not availableUpstream-179
Upstream-180
Matrix_237MYB55Not availableUpstream-163
Matrix_244DREB2CNot availableUpstream-164
Upstream-165
Matrix_285DDF1Not availableUpstream-179
Upstream-180
Matrix_292FTQ4Not availableUpstream-180
Matrix_312ARF11;MP;ARF6;IAA21;ARF8;ARF4Not availableUpstream-179
Upstream-180
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-165
Upstream-166
Matrix_385DEAR4Not availableUpstream-164
Upstream-165
Matrix_387ORA47Not availableUpstream-163
Upstream-164
Matrix_394DREB_UNot availableUpstream-164
Upstream-165
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-164
Upstream-165
Matrix_401MYB55Not availableUpstream-164
Upstream-165
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-164
Upstream-165
Matrix_478AT1G01250Not availableUpstream-165
Upstream-166
Matrix_496ATMYB15Not availableUpstream-161
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-161
Upstream-162
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-179
Upstream-180
Matrix_70GATA26Not availableUpstream-161
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-165
Upstream-166
Matrix_92AT1G33760Not availableUpstream-164
Upstream-165
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-102
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-98
Motif_184PROXBBNNAPAprox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-138
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-38
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-38
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-161
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-50
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-165
Upstream-181
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterUpstream-141
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-147
Motif_419MYB4 binding site motifNot availableUpstream-141
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-166
Upstream-182
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-177
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-166
Upstream-182
Upstream-299
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-142
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-172
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-166
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-139
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-51
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-142
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-139
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-115